JPsnpHou00445, JPsnpHou00445 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00445
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GCAAACCTCAATCCTTTCTTTCAACCATGGCTGCTTCCACAATGGCTCTGTCTTCTCCAA CCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCACCGAGCTTTTCGGAAATGGAA GAGTCTCCATGAGGAAAACTGCTACCAAACAAGTCTCCTCTGGCAGCCCATGGTACGGCC CTGATAGAGTCAAGTACTTGGGGCCATTCTCCGGCGAGCCCCCAAGCTACCTTACCGGCG AGTTCCCCGGTGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCG CCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGAGCTCTTGGAT GCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTTCGGCGAAGCCGTGTGGTTCA AGGCCGGAGCCCAGATCTTCAGCGAGGGCGGTCTCGACTACTTGGGAAACCCTAGCTTGG TCCATGCACAGAGCATTTTGGCCATCTGGGCTACCCAAGTGGTATTGATGGGCGCAGTTG AGGGATACAGAATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCTCTTTACCCCGGAG GAAGCTTCGACCCGTTGGGCCTTGCCGATGACCCAGAAGCCTTTGCTGAGCTCAAGGTGA AGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTTTGGATTCTTTGTCCAGGCCA TCGTCACCGGAAAGGGACCATTGGAGAACCTTGCCGACCACCTTGCCGACCCGGTCGCCA ACAATGCTTGGAACTATGCCACAAACTTTGTTCCCGGAAAGTGAGAGCTCGGAATTGTTT TGTACTATTGTTTGTAGTGTTGTCGATGATGTAAATTTGGTACCAAGTGATGGA
3' Flanking Sequence	AACAATTAATTTGAACTATTTCGATCTTTTCGTTTTTGAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 895

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	163.2	JPsnpHou00445	View

Sequence

>JPsnpHou00445 ID=JPsnpHou00445; Name=JPsnpHou00445; organism=Pyrus pyrifolia; type=genetic_marker; length=936bp
GCAAACCTCAATCCTTTCTTTCAACCATGGCTGCTTCCACAATGGCTCTG
TCTTCTCCAACCTTCGCCGGCAAAGCCGTGCAACTTTCCCCGGGAGCCAC
CGAGCTTTTCGGAAATGGAAGAGTCTCCATGAGGAAAACTGCTACCAAAC
AAGTCTCCTCTGGCAGCCCATGGTACGGCCCTGATAGAGTCAAGTACTTG
GGGCCATTCTCCGGCGAGCCCCCAAGCTACCTTACCGGCGAGTTCCCCGG
TGACTACGGCTGGGACACCGCCGGACTCTCAGCTGACCCAGAGACCTTCG
CCAAGAACCGTGAGCTCGAAGTGATCCACTCCAGATGGGCCATGCTCGGA
GCTCTTGGATGCGTTTTCCCAGAGCTCTTGTCCCGCAACGGTGTCAAGTT
CGGCGAAGCCGTGTGGTTCAAGGCCGGAGCCCAGATCTTCAGCGAGGGCG
GTCTCGACTACTTGGGAAACCCTAGCTTGGTCCATGCACAGAGCATTTTG
GCCATCTGGGCTACCCAAGTGGTATTGATGGGCGCAGTTGAGGGATACAG
AATTGCCGGCGGACCCCTCGGAGAGGTGACCGACCCTCTTTACCCCGGAG
GAAGCTTCGACCCGTTGGGCCTTGCCGATGACCCAGAAGCCTTTGCTGAG
CTCAAGGTGAAGGAGCTCAAGAATGGAAGGTTGGCCATGTTCTCCATGTT
TGGATTCTTTGTCCAGGCCATCGTCACCGGAAAGGGACCATTGGAGAACC
TTGCCGACCACCTTGCCGACCCGGTCGCCAACAATGCTTGGAACTATGCC
ACAAACTTTGTTCCCGGAAAGTGAGAGCTCGGAATTGTTTTGTACTATTG
TTTGTAGTGTTGTCGATGATGTAAATTTGGTACCAAGTGATGGAmAACAA
TTAATTTGAACTATTTCGATCTTTTCGTTTTTGAAC