JPsnpHou00652, JPsnpHou00652 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00652
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CTGACAAATGACATCAACATATTACAATCATCAATTTGTCATCCATCAACTTCGACATTA CAGGGTTGCTGCTTGCATTACAAGCTTACAATATGGTACAACACTGATTGGTCTGTTTCG CCAATTGCCAGAACACAATTCTTACTCTCGCTTTCTTCACCTCTCCACGATCTCAATCTT CAAATCCCCAAATCTCTAAATCCCTAAATCGAACACCAGCCCACAAACTCTGCGTTCAGA TCGTGCGGACAGAAAAATCAGAGAAGGAAGATGAAGATCACGGCTTTGCTGGTTCTCAAG TGCAATCCAGACGAATCCGACCCGATCATCTTGGCCAACGCCTCCGATACCAGTCACTTC GGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCTTCGTCGGTCGCACCGTCGCC AGACGTACCCCGCCCGGCCAACGCCAGTCCGTCAAGCACGAAGAGTATAAAGTACACGCT TACAACAGCAATGGTCTCTGTGCGCTGGGCTTTATGGATGATCACTATCCCGTTCGAAGT GCATTTTCTCTGCTCAACCAGGTGCTAGATGAATATCAGAAAAATTTTGGTGATTCTTGG AGGACTGCAAAACAGGATGGCACACAACCATGGCCTTATTTGAGTGAGGCTCTGACGAAA TTCCAGGATCCTGCAGAGGCTGATAAGTTGTTGAAAATTCAAAGGGAATTGGATGAAACA AAAATTATCCTTCATAAGACCATTGATAGTGTGCTTGCACGAGGTGAGAGACTGGACAGT TTAGTTGAGAAGAGTTCAGATCTTAGTGCAGCATCGCAGATGTTCTACAAGCAGGCGAAA CAGACCAATCAGTGTTGTACCATATTGTAAGCTTGTAATGC
3' Flanking Sequence	AGCAGCAACCCTGTAATGTCGAAGTTGATGGATGACAAATTGATGATTGTAATATGTTGA TGTCATTTGTCnGTTGTTTGCTTGGCAGAATTGTGTGAAGTTCCTCATTTCTTCCGTCTC AAAGAAACGGAAACCAAATATTCATCGAGTCCCTGCTATTATAGTATGTTACTGTTTCTG TTTCGTAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 882

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	15.38	JPsnpHou00652	View

Sequence

>JPsnpHou00652 ID=JPsnpHou00652; Name=JPsnpHou00652; organism=Pyrus pyrifolia; type=genetic_marker; length=1071bp
CTGACAAATGACATCAACATATTACAATCATCAATTTGTCATCCATCAAC
TTCGACATTACAGGGTTGCTGCTTGCATTACAAGCTTACAATATGGTACA
ACACTGATTGGTCTGTTTCGCCAATTGCCAGAACACAATTCTTACTCTCG
CTTTCTTCACCTCTCCACGATCTCAATCTTCAAATCCCCAAATCTCTAAA
TCCCTAAATCGAACACCAGCCCACAAACTCTGCGTTCAGATCGTGCGGAC
AGAAAAATCAGAGAAGGAAGATGAAGATCACGGCTTTGCTGGTTCTCAAG
TGCAATCCAGACGAATCCGACCCGATCATCTTGGCCAACGCCTCCGATAC
CAGTCACTTCGGCTACTTCCAGAGGTCCAGCGTCAAGGAGTTCATCGTCT
TCGTCGGTCGCACCGTCGCCAGACGTACCCCGCCCGGCCAACGCCAGTCC
GTCAAGCACGAAGAGTATAAAGTACACGCTTACAACAGCAATGGTCTCTG
TGCGCTGGGCTTTATGGATGATCACTATCCCGTTCGAAGTGCATTTTCTC
TGCTCAACCAGGTGCTAGATGAATATCAGAAAAATTTTGGTGATTCTTGG
AGGACTGCAAAACAGGATGGCACACAACCATGGCCTTATTTGAGTGAGGC
TCTGACGAAATTCCAGGATCCTGCAGAGGCTGATAAGTTGTTGAAAATTC
AAAGGGAATTGGATGAAACAAAAATTATCCTTCATAAGACCATTGATAGT
GTGCTTGCACGAGGTGAGAGACTGGACAGTTTAGTTGAGAAGAGTTCAGA
TCTTAGTGCAGCATCGCAGATGTTCTACAAGCAGGCGAAACAGACCAATC
AGTGTTGTACCATATTGTAAGCTTGTAATGCrAGCAGCAACCCTGTAATG
TCGAAGTTGATGGATGACAAATTGATGATTGTAATATGTTGATGTCATTT
GTCnGTTGTTTGCTTGGCAGAATTGTGTGAAGTTCCTCATTTCTTCCGTC
TCAAAGAAACGGAAACCAAATATTCATCGAGTCCCTGCTATTATAGTATG
TTACTGTTTCTGTTTCGTAAC