JPsnpHou00114, JPsnpHou00114 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00114
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	CGCGCGGCACGGTGGTCCTCGCAGAGTACACGGAATTCACCGGAAACTTCACCAGCATAG CCTCCCAGTGCCTCCAGAAACTTCCGGCCACCAACAACAAGTTCACCTACAACTGCGACG GCCACACCTTCAACTACCTCGTCGATAATGGCTTCACATATTGTGTAGTTGCAGTTGAGG CGGTTGGTCGACAAGTTCCTATTGCCTTCCTTGAGCGGATCAAGGAGGATTTTACCGGCA GATATGGAGGGGGAAAAGCTGCAACAGCAGTTGCAAATAGCCTGAACAAGGAATTTGGGT CCAAACTGAAGGAGCACATGCAATACTGTGTGGATCATCCCGAAGAGATCAGCAAGCTTG CAAAAGTGAAAGCTCAGGTTTCCGAAGTCAAAGGAGTTATGATGGAAAATATTGAGAAGG TTCTTGATCGTGGGGAGAAGATTGAACTTCTGGTGGATAAAACAGAGAACCTCCGCTCAC AGGCACAAGATTTCAGGCAGCAGGGGACCCAGATGAGGAGGAAGATGTGGTTGCAGAACA TGAAGGTCAAGCTGATAGTTTTGGGAATCTTAATCGCATTGATTCTCATCATCGTTCTAT CCGTGTGCAATGGCTTCAAATGCTGATGTGTCCAGACTCTTACTGCAGACTGGATGACGT TCGTTCCTCGCGCAGATTTCTGGTCTACnTATAATTATTTTTGGCACATCCTACTTTCTG CAATATTTTGTATTGTAAGACCGTTTGTATAGCTTGTATTCGCGAATTCTTTCTAT
3' Flanking Sequence	ATAGGCCCGCTCGGAAGTGTGAATCGCTCTTTGATTCCTTTTGTTCCGTGGAACTTATGT TGTAGCACTTTGTGACTGATTTGGCAAAACAACTGTGAGTGTTTCTAGATTTGATATTCA ACAAGTGAGAAGTGTCGAACATGCAAATGAAAGGTGCAGGAAATGTGTTGCTTTTCGTCT TCAATTGAGAATCGAAAACACGAAGGGAAATGTCCCTTGAGAATAATGTATGAAAATAGG CTTTTGCCGAACAGAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 777

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	117.44	JPsnpHou00114	View

Sequence

>JPsnpHou00114 ID=JPsnpHou00114; Name=JPsnpHou00114; organism=Pyrus pyrifolia; type=genetic_marker; length=1036bp
CGCGCGGCACGGTGGTCCTCGCAGAGTACACGGAATTCACCGGAAACTTC
ACCAGCATAGCCTCCCAGTGCCTCCAGAAACTTCCGGCCACCAACAACAA
GTTCACCTACAACTGCGACGGCCACACCTTCAACTACCTCGTCGATAATG
GCTTCACATATTGTGTAGTTGCAGTTGAGGCGGTTGGTCGACAAGTTCCT
ATTGCCTTCCTTGAGCGGATCAAGGAGGATTTTACCGGCAGATATGGAGG
GGGAAAAGCTGCAACAGCAGTTGCAAATAGCCTGAACAAGGAATTTGGGT
CCAAACTGAAGGAGCACATGCAATACTGTGTGGATCATCCCGAAGAGATC
AGCAAGCTTGCAAAAGTGAAAGCTCAGGTTTCCGAAGTCAAAGGAGTTAT
GATGGAAAATATTGAGAAGGTTCTTGATCGTGGGGAGAAGATTGAACTTC
TGGTGGATAAAACAGAGAACCTCCGCTCACAGGCACAAGATTTCAGGCAG
CAGGGGACCCAGATGAGGAGGAAGATGTGGTTGCAGAACATGAAGGTCAA
GCTGATAGTTTTGGGAATCTTAATCGCATTGATTCTCATCATCGTTCTAT
CCGTGTGCAATGGCTTCAAATGCTGATGTGTCCAGACTCTTACTGCAGAC
TGGATGACGTTCGTTCCTCGCGCAGATTTCTGGTCTACnTATAATTATTT
TTGGCACATCCTACTTTCTGCAATATTTTGTATTGTAAGACCGTTTGTAT
AGCTTGTATTCGCGAATTCTTTCTATmATAGGCCCGCTCGGAAGTGTGAA
TCGCTCTTTGATTCCTTTTGTTCCGTGGAACTTATGTTGTAGCACTTTGT
GACTGATTTGGCAAAACAACTGTGAGTGTTTCTAGATTTGATATTCAACA
AGTGAGAAGTGTCGAACATGCAAATGAAAGGTGCAGGAAATGTGTTGCTT
TTCGTCTTCAATTGAGAATCGAAAACACGAAGGGAAATGTCCCTTGAGAA
TAATGTATGAAAATAGGCTTTTGCCGAACAGAAAAA