JPsnpHou00439, JPsnpHou00439 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00439
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGAAAGAAAAGACTGGAACCCCGACAAGAGTCCAGGGGAATTTCGAAACAAAAATGGGTT GAAGAGAGGAAGAAAAGAATCGGCAAACTTCTAGATGCCAATGGTTTGGATATGAAAAGT GCATACATGCTAGATACGCAAGAGATGGCAGAGGAAAAATATAAGAAATGGGAAAAGGAT CCTGCCCCAGTTGGCTGGGATGTTTTCAATCAGAAAACTCTGTACAATGCATACAAAAAG CGGACGAAGAACATTGATATTGACTTGGAAGAATACAATAGGATGAAAGAAGCTGATCCG GAGTTCTATCGTGAAGCTTCCAGCCTCCAATATGGGAAGGCTCCAAAGATATCAGAGGAT AAACTTGACAAGATGGTGAAGGAACTCAAGGATCGGGAAGAGAAGAAGGCTTCCTTCAGC AGGAGGAGGAGGTTCCACGATGAGAAAGATATTGACTCGATCAATGACCGCAATGAGCAT TTCAACAAGAAGATTGAGCGAGCCTTTGGTAAATACACGTTGGAAATCAAAAACAATCTT GAGCGCGGAACTGCATTGCCCGACTAAGGTAAACGTAGCAAAATGCACTGCCTTTTGATG TTTGTCTAATTGTGAAAGTCAACTGGCTGACGGGAACTTATGATTCCCTCGGCTTACTGC TACTGGCAGCTTCGGTGCCGATGAATTGTAATAATAGAATACATGTTGGAACTAAGGTGA AATGGTTTGTGATATTCAGATTTTGTTCTAGTTGAAGTGGCGTAGCAAGTTTT
3' Flanking Sequence	ATGTGGAAACAGATATTTCTTATCTACTCATCTGCATTGTATTTGACTGTCAATTCGTAT CCGTCTGATTGCGGTTGGAATTTAGACAGTTATATGGAAAGTTTTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 774

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG5	N/A	74.48	JPsnpHou00439	View

Sequence

>JPsnpHou00439 ID=JPsnpHou00439; Name=JPsnpHou00439; organism=Pyrus pyrifolia; type=genetic_marker; length=881bp
GGAAAGAAAAGACTGGAACCCCGACAAGAGTCCAGGGGAATTTCGAAACA
AAAATGGGTTGAAGAGAGGAAGAAAAGAATCGGCAAACTTCTAGATGCCA
ATGGTTTGGATATGAAAAGTGCATACATGCTAGATACGCAAGAGATGGCA
GAGGAAAAATATAAGAAATGGGAAAAGGATCCTGCCCCAGTTGGCTGGGA
TGTTTTCAATCAGAAAACTCTGTACAATGCATACAAAAAGCGGACGAAGA
ACATTGATATTGACTTGGAAGAATACAATAGGATGAAAGAAGCTGATCCG
GAGTTCTATCGTGAAGCTTCCAGCCTCCAATATGGGAAGGCTCCAAAGAT
ATCAGAGGATAAACTTGACAAGATGGTGAAGGAACTCAAGGATCGGGAAG
AGAAGAAGGCTTCCTTCAGCAGGAGGAGGAGGTTCCACGATGAGAAAGAT
ATTGACTCGATCAATGACCGCAATGAGCATTTCAACAAGAAGATTGAGCG
AGCCTTTGGTAAATACACGTTGGAAATCAAAAACAATCTTGAGCGCGGAA
CTGCATTGCCCGACTAAGGTAAACGTAGCAAAATGCACTGCCTTTTGATG
TTTGTCTAATTGTGAAAGTCAACTGGCTGACGGGAACTTATGATTCCCTC
GGCTTACTGCTACTGGCAGCTTCGGTGCCGATGAATTGTAATAATAGAAT
ACATGTTGGAACTAAGGTGAAATGGTTTGTGATATTCAGATTTTGTTCTA
GTTGAAGTGGCGTAGCAAGTTTTmATGTGGAAACAGATATTTCTTATCTA
CTCATCTGCATTGTATTTGACTGTCAATTCGTATCCGTCTGATTGCGGTT
GGAATTTAGACAGTTATATGGAAAGTTTTAG