JPsnpHou00487, JPsnpHou00487 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00487
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	CTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGCATGGGTATATATGTTGTG AGCAAAAATGTCATGTTAGATCTACTTCGAGACAAGTTTCCTGGTGCAAATGATTTCGGG AGTGAAGTTATTCCAGGCGCAACATCCATTGGTTTGAGAGTTCAAGCTTATTTGTATGAT GGCTACTGGGAAGATATTGGTACCATTGAGGCTTTCTACAAGGCAAACTTGGGGATAACA AAAAAACCAGTTCCAGATTTCAGCTTTTATGATCGTTCATCCCCTATCTACACCCAACCT CGGTATTTACCTCCATCAAAAATGCTTGATGCTGATGTCACAGATAGTGTTATTGGCGAG GGATGTGTAATAAAGAACTGTAAAATTCACCATTCAGTCGTTGGACTTCGGTCTTGCATA GCAGCGGGTGCTGTCATTGAAGACACATTACTGATGGGAGCTGACTACTATGAGACTGAT GCTGACAGGAGGTTCCTTTCTGCGAAGGGCAGCGTTCCAATTGGTATTGGCAAGAATTCC CACATTAGGAnAGCTATAATTGATAAGAATGCnCGAATTGGAGAGAATGTTAAGATTATC AATAGCGACAATGTGCAAGAAGCAGCAAGAGAAACAGACGGATATTTCATAAAGAGCGGG ATTGTCACAGTGATCAAGGATGCCTTGATTCCTAGTGGAACAGTAATCTAGCCGCCTCCT TATTTTCCACTCGTTTAATGCCAA
3' Flanking Sequence	AGCGAAGGTTCTTTTGAGTTACTGGGCTGAGATGCAGCTCTAGCAACTTAGCAAGTACTT TGAGCCGTTCTGTCTACTGTTCATGTAATGTACATTTCACGGTACTACGATGTAGTTAAT GAGGAAGAGACGAATTTGCTCTGTAGATGCTCAACTTCTATCTCAAATAAAGTTTTTTTT G
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 745

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	132.41	JPsnpHou00487	View

Sequence

>JPsnpHou00487 ID=JPsnpHou00487; Name=JPsnpHou00487; organism=Pyrus pyrifolia; type=genetic_marker; length=926bp
CTTGATGATGAGAGAGCTAAAGAGATGCCTTATATTGCCAGCATGGGTAT
ATATGTTGTGAGCAAAAATGTCATGTTAGATCTACTTCGAGACAAGTTTC
CTGGTGCAAATGATTTCGGGAGTGAAGTTATTCCAGGCGCAACATCCATT
GGTTTGAGAGTTCAAGCTTATTTGTATGATGGCTACTGGGAAGATATTGG
TACCATTGAGGCTTTCTACAAGGCAAACTTGGGGATAACAAAAAAACCAG
TTCCAGATTTCAGCTTTTATGATCGTTCATCCCCTATCTACACCCAACCT
CGGTATTTACCTCCATCAAAAATGCTTGATGCTGATGTCACAGATAGTGT
TATTGGCGAGGGATGTGTAATAAAGAACTGTAAAATTCACCATTCAGTCG
TTGGACTTCGGTCTTGCATAGCAGCGGGTGCTGTCATTGAAGACACATTA
CTGATGGGAGCTGACTACTATGAGACTGATGCTGACAGGAGGTTCCTTTC
TGCGAAGGGCAGCGTTCCAATTGGTATTGGCAAGAATTCCCACATTAGGA
nAGCTATAATTGATAAGAATGCnCGAATTGGAGAGAATGTTAAGATTATC
AATAGCGACAATGTGCAAGAAGCAGCAAGAGAAACAGACGGATATTTCAT
AAAGAGCGGGATTGTCACAGTGATCAAGGATGCCTTGATTCCTAGTGGAA
CAGTAATCTAGCCGCCTCCTTATTTTCCACTCGTTTAATGCCAAsAGCGA
AGGTTCTTTTGAGTTACTGGGCTGAGATGCAGCTCTAGCAACTTAGCAAG
TACTTTGAGCCGTTCTGTCTACTGTTCATGTAATGTACATTTCACGGTAC
TACGATGTAGTTAATGAGGAAGAGACGAATTTGCTCTGTAGATGCTCAAC
TTCTATCTCAAATAAAGTTTTTTTTG