JPsnpHou00210, JPsnpHou00210 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00210
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	ATGTAGATGAAGACGACTCAAATATTGATATCAGATAATCGTACTAGTAACACCCAGAAA TTCACAGACGGATTTAGTAATTTCCAAGTGCCAGATTAAACACAGAAATTCCGAAATCCG ATATAAACGAAATCCAAAAAACCAGAACCGGAAAGCGAGCAGCACAGAGATCCGATGGCA TTGGAGTGGGTTGTCCTTGGCTACGCCGCCGCCGCGGAGGCGATCATGGTGCTnCTTCTC ACGATCCCCGGCCTCGACGGCCTCCGCAAAGGCCTCGTCACCGTCACCCGTAATCTCCTC AAACCGTTTCTGTCGGTGGTGCCGTTCTGCCTCTTCTTGCTCATGGACATCTACTGGAAG TACGAGACTCGCCCGAGCTGCGATGGAGACTCCTGCACTCCCTCGGAGTACCTCCGCCAC CAGAAGTCGATCATGAAGAGCCAGCGCAACGCGCTCTTGATCGCCGCCGCACTGATCTTC TACTGGCTCCTCTACACCGTCACCCACCTCGTCGTCCGCATCGAGCAGCTGAACCAGCGC GTGGAGCGCTTGAAGAATCGCGACTGATTCCACTCGGTTTGCATTTCGATTTCCAAGCTT TTAGCTTATTTTGTGTTTCGATGATTGATTATTTGGATTTCGTTTATATCGGATTTCGGA ATTTCTGTGTTTAATCTGGCACTTGGAAATTACTAATCCGTCTGTGAATTTCTGGGTGTT
3' Flanking Sequence	CTAGTACGATTATCTGATATCAATATTTGAGTCGTCTTTAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 721

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	7.03	JPsnpHou00210	View

Sequence

>JPsnpHou00210 ID=JPsnpHou00210; Name=JPsnpHou00210; organism=Pyrus pyrifolia; type=genetic_marker; length=762bp
ATGTAGATGAAGACGACTCAAATATTGATATCAGATAATCGTACTAGTAA
CACCCAGAAATTCACAGACGGATTTAGTAATTTCCAAGTGCCAGATTAAA
CACAGAAATTCCGAAATCCGATATAAACGAAATCCAAAAAACCAGAACCG
GAAAGCGAGCAGCACAGAGATCCGATGGCATTGGAGTGGGTTGTCCTTGG
CTACGCCGCCGCCGCGGAGGCGATCATGGTGCTnCTTCTCACGATCCCCG
GCCTCGACGGCCTCCGCAAAGGCCTCGTCACCGTCACCCGTAATCTCCTC
AAACCGTTTCTGTCGGTGGTGCCGTTCTGCCTCTTCTTGCTCATGGACAT
CTACTGGAAGTACGAGACTCGCCCGAGCTGCGATGGAGACTCCTGCACTC
CCTCGGAGTACCTCCGCCACCAGAAGTCGATCATGAAGAGCCAGCGCAAC
GCGCTCTTGATCGCCGCCGCACTGATCTTCTACTGGCTCCTCTACACCGT
CACCCACCTCGTCGTCCGCATCGAGCAGCTGAACCAGCGCGTGGAGCGCT
TGAAGAATCGCGACTGATTCCACTCGGTTTGCATTTCGATTTCCAAGCTT
TTAGCTTATTTTGTGTTTCGATGATTGATTATTTGGATTTCGTTTATATC
GGATTTCGGAATTTCTGTGTTTAATCTGGCACTTGGAAATTACTAATCCG
TCTGTGAATTTCTGGGTGTTrCTAGTACGATTATCTGATATCAATATTTG
AGTCGTCTTTAT