JPsnpHou00078, JPsnpHou00078 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00078
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGATTTTACAATGATTATGACTTAAGGGGCTATAAGATCAGTGTTGGAATGGCGGAGAGA TCAGCTCCAAGGCCTTCGTTTGAACGAAGGTGGTGGTGGCGGTAGAGGTGGATATGGTGG TGGTGACAGGCGCAACAGTTATAGAGACGGTGGAGCTGATAGACATCAGCACGGTGGAAA CCGTTCGCGTCCTTACTGAGAGAATTTCCAGGTTGATATTTTCAGATGCAAGCATTGATA TCTGTACATGCTTTCTGACCGAAAATTTGTCGCCCGTATGAGAAATCACTGAAGATGCTT CCCGTGGCTGGGAGTTTATATTGGAATGTACTCGATGTTAGATGTGAATCCTGACCATTG GATTGGATTTTGTTTAACTTTGATCTCCAGCTGAACTTATTTAAGTTGCTACCATGTTAC AAGGAATAGGTTTTCCATGTAGGATTTTGTTATATTGGATTGGTTAGAGATTTTTGATCA TGTTGTGTGGAGGCTCTTTTCCTACATCGAGGCTTTTGCTTTGCGGTGATTCTACTTCAC CACATCAATCTAGTGTTTTAAGATCTAGTATTGTGCCAAAACGTCATGGTGCCTAAAATT TTGCCTACCGGTTGCCTTAATTGTTCAGCTACTTACTGGGTGGGGCTTGTCTTCCTTGTG GGTGACTGCAATGTACTTGTGGATGACAAGAATATCCGCGTAGCTACTAGCTCCTCGC
3' Flanking Sequence	TCAACTATCATGTCCTTCATTCTGTTGCTGATGGGTGCTTGCTGTCATGTGCTTCGATTG TATTCTTGGCATTTGCCTTGTGGTTTTCTTTCAGTTTTTAGTTTAGGCAATGATGGAGTA CACCCTAGTAATCACTTTGCGGTCGGAGTTCAAATTGTTGTATTACATCCCAAACATTTG CATATTTGAATCAAACCGTTTGTTTCC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 719

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	49.01	JPsnpHou00078	View

Sequence

>JPsnpHou00078 ID=JPsnpHou00078; Name=JPsnpHou00078; organism=Pyrus pyrifolia; type=genetic_marker; length=926bp
GGATTTTACAATGATTATGACTTAAGGGGCTATAAGATCAGTGTTGGAAT
GGCGGAGAGATCAGCTCCAAGGCCTTCGTTTGAACGAAGGTGGTGGTGGC
GGTAGAGGTGGATATGGTGGTGGTGACAGGCGCAACAGTTATAGAGACGG
TGGAGCTGATAGACATCAGCACGGTGGAAACCGTTCGCGTCCTTACTGAG
AGAATTTCCAGGTTGATATTTTCAGATGCAAGCATTGATATCTGTACATG
CTTTCTGACCGAAAATTTGTCGCCCGTATGAGAAATCACTGAAGATGCTT
CCCGTGGCTGGGAGTTTATATTGGAATGTACTCGATGTTAGATGTGAATC
CTGACCATTGGATTGGATTTTGTTTAACTTTGATCTCCAGCTGAACTTAT
TTAAGTTGCTACCATGTTACAAGGAATAGGTTTTCCATGTAGGATTTTGT
TATATTGGATTGGTTAGAGATTTTTGATCATGTTGTGTGGAGGCTCTTTT
CCTACATCGAGGCTTTTGCTTTGCGGTGATTCTACTTCACCACATCAATC
TAGTGTTTTAAGATCTAGTATTGTGCCAAAACGTCATGGTGCCTAAAATT
TTGCCTACCGGTTGCCTTAATTGTTCAGCTACTTACTGGGTGGGGCTTGT
CTTCCTTGTGGGTGACTGCAATGTACTTGTGGATGACAAGAATATCCGCG
TAGCTACTAGCTCCTCGCrTCAACTATCATGTCCTTCATTCTGTTGCTGA
TGGGTGCTTGCTGTCATGTGCTTCGATTGTATTCTTGGCATTTGCCTTGT
GGTTTTCTTTCAGTTTTTAGTTTAGGCAATGATGGAGTACACCCTAGTAA
TCACTTTGCGGTCGGAGTTCAAATTGTTGTATTACATCCCAAACATTTGC
ATATTTGAATCAAACCGTTTGTTTCC