JPsnpHou00409, JPsnpHou00409 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00409
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTTTTCCTTCTCCCACGCTCGCACCTCCTCCGATCTACCCGCCAACGAAATCAAAGCCCG CGATCCAGCCGACGCCAAGTTACCCGAATCCAATCCCAAGCCCAAAACCCCCACCACCGT CACCATCCGCTTGCCTAGCGAGAAACCCGACACCGAGTCCGCAACCGGCCCCACCATCTT AGCAAAGGAAGAGTCGACCATCGAGACCGTCCCGTTGACCGTCTTCAGCTTCCGCCCCGT CAACCGCCACTTCCCCAGGCGCCCCTTCCCGTTGTCTTTCCGTCACGGCCGCCCATGCCG CCACGGCCGGCGCCCCTGGACCCCGCGCTTTCACGGAGGTGAGCGCGAACATCGCGAGGT TGAGTCTGTTTCGTACGGCAACGATATGATCATGGCGTCTGGGGACAACATGGGATTCGA TCCGGCGTTTCACGGCGGAGAGCGACAGATCCCCTCTAGGTGGGTCAATTTCCGCCACGG TGGGCCTAGGTTCCCGTTCAGGCATGAGGAAGAAATGGAATTGGAGAGGCCGCATCACCA TCACCACCACCGCCACCACCATGACCACGACCAAGACCGCCGCGAAGGATTCGAAGGAAT GGAGAAGCCGTTTAGAGAGCACAAGCATGAGCATGAGGGCGGTTTGATGAGGAAGTTCCG CAAGTTCTTGAACCACTTTTGAGCTTTGAAGCCATTGATTGATC
3' Flanking Sequence	CACATATCAATCTAATCTATCTTTTTATGCTTGCTTCTAGTTTATGTAAAGAACTTCGCA TCCATGAGAGATGTAGAATCGTATTTATGTTCGTATACTCATAATCGTATGTTTATATGT ATGTGTTTnTATTTGTATTGAGTATGAGTAGATTGTGTTTATGTATTTCTACTTGATGAA TTTGAATTTTGTTTGAAAGAAAAAAAAAAAAAAANAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 705

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	106.74	JPsnpHou00409	View

Sequence

>JPsnpHou00409 ID=JPsnpHou00409; Name=JPsnpHou00409; organism=Pyrus pyrifolia; type=genetic_marker; length=926bp
CTTTTCCTTCTCCCACGCTCGCACCTCCTCCGATCTACCCGCCAACGAAA
TCAAAGCCCGCGATCCAGCCGACGCCAAGTTACCCGAATCCAATCCCAAG
CCCAAAACCCCCACCACCGTCACCATCCGCTTGCCTAGCGAGAAACCCGA
CACCGAGTCCGCAACCGGCCCCACCATCTTAGCAAAGGAAGAGTCGACCA
TCGAGACCGTCCCGTTGACCGTCTTCAGCTTCCGCCCCGTCAACCGCCAC
TTCCCCAGGCGCCCCTTCCCGTTGTCTTTCCGTCACGGCCGCCCATGCCG
CCACGGCCGGCGCCCCTGGACCCCGCGCTTTCACGGAGGTGAGCGCGAAC
ATCGCGAGGTTGAGTCTGTTTCGTACGGCAACGATATGATCATGGCGTCT
GGGGACAACATGGGATTCGATCCGGCGTTTCACGGCGGAGAGCGACAGAT
CCCCTCTAGGTGGGTCAATTTCCGCCACGGTGGGCCTAGGTTCCCGTTCA
GGCATGAGGAAGAAATGGAATTGGAGAGGCCGCATCACCATCACCACCAC
CGCCACCACCATGACCACGACCAAGACCGCCGCGAAGGATTCGAAGGAAT
GGAGAAGCCGTTTAGAGAGCACAAGCATGAGCATGAGGGCGGTTTGATGA
GGAAGTTCCGCAAGTTCTTGAACCACTTTTGAGCTTTGAAGCCATTGATT
GATCyCACATATCAATCTAATCTATCTTTTTATGCTTGCTTCTAGTTTAT
GTAAAGAACTTCGCATCCATGAGAGATGTAGAATCGTATTTATGTTCGTA
TACTCATAATCGTATGTTTATATGTATGTGTTTnTATTTGTATTGAGTAT
GAGTAGATTGTGTTTATGTATTTCTACTTGATGAATTTGAATTTTGTTTG
AAAGAAAAAAAAAAAAAAANAAAAAA