JPsnpHou00618, JPsnpHou00618 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00618
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	CTGGGTTTTGCTGTACACTGCATCCTCTGAGCTGTTGCCACTACTCGCAGCAGGTGGCAC ACCATTGTTGAAGGTAAATAAAATAACCCAAGCAATCAACAGTAGCAGCCTGACCATTTT GAACTCCACCACGCTGTCCGGCCCTTTTGCTAGCTTCTCGTTCAGTGCATCTGCTAGCTT TGAAGTTAGGAGTCCGTCAAGAATCCAGGTGGAATTCAAGGAAGGCAGCTTTCAGCCTCC GGAGATTAAGTCAAGCGTTGATCTCCCTCAAGAAGTGGAAGTCTTTGGGCAGAAAATCAA TTTATCGCCCGTCCAGCAAACTCTCAATCCTTTGCAGGATGCTGTTGCAGGTATCTCTAG GACCATTTCTGGTCAGCCACCGCTTAAGGTTCCCGTTCCAGGTGAACGGACCAAGTCTTG GCTTCTTATTACATACCTTGATGAGGATCTTCGGATCTCAAGGGGGGATGGTGGTCTTTT TGTGCTTGCTAGAGAAGGGAGCCCGCTTTTATATCAGTAACGCGGTACGTTCAGTTCGGT TGTGTCATGGATACGAGGTCATATACATATAGTCAAACTCGTAnAAGGAAAATGATGGTA TATTTATATTGTGTACTTGAGTATTTTTCAGATATGAAAATGTATCCCTATTTTGCAGCT TCCGCTTCCAGTCTGCATTGCTGAGA
3' Flanking Sequence	GCCAATGATTAAAATGCAGATTAAGGAATAGGGTTGGTTGAATTGTTATGCATCAGTTAG ATACATTTCGTCAACATTGTTGTCATTTTTTTTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 687

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	37.28	JPsnpHou00618	View

Sequence

>JPsnpHou00618 ID=JPsnpHou00618; Name=JPsnpHou00618; organism=Pyrus pyrifolia; type=genetic_marker; length=782bp
CTGGGTTTTGCTGTACACTGCATCCTCTGAGCTGTTGCCACTACTCGCAG
CAGGTGGCACACCATTGTTGAAGGTAAATAAAATAACCCAAGCAATCAAC
AGTAGCAGCCTGACCATTTTGAACTCCACCACGCTGTCCGGCCCTTTTGC
TAGCTTCTCGTTCAGTGCATCTGCTAGCTTTGAAGTTAGGAGTCCGTCAA
GAATCCAGGTGGAATTCAAGGAAGGCAGCTTTCAGCCTCCGGAGATTAAG
TCAAGCGTTGATCTCCCTCAAGAAGTGGAAGTCTTTGGGCAGAAAATCAA
TTTATCGCCCGTCCAGCAAACTCTCAATCCTTTGCAGGATGCTGTTGCAG
GTATCTCTAGGACCATTTCTGGTCAGCCACCGCTTAAGGTTCCCGTTCCA
GGTGAACGGACCAAGTCTTGGCTTCTTATTACATACCTTGATGAGGATCT
TCGGATCTCAAGGGGGGATGGTGGTCTTTTTGTGCTTGCTAGAGAAGGGA
GCCCGCTTTTATATCAGTAACGCGGTACGTTCAGTTCGGTTGTGTCATGG
ATACGAGGTCATATACATATAGTCAAACTCGTAnAAGGAAAATGATGGTA
TATTTATATTGTGTACTTGAGTATTTTTCAGATATGAAAATGTATCCCTA
TTTTGCAGCTTCCGCTTCCAGTCTGCATTGCTGAGAsGCCAATGATTAAA
ATGCAGATTAAGGAATAGGGTTGGTTGAATTGTTATGCATCAGTTAGATA
CATTTCGTCAACATTGTTGTCATTTTTTTTTT