JPsnpHou00156, JPsnpHou00156 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00156
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	GTCCTACCTCCATCTCCCCAGCTTCCTGCTAATCATACCCCCAAATCACAAAGCCATGGG CACTGAAGTTGTAATGGTGGATGAGGTCCCTTTTCCTCCTCAGATCACAACCACCAAGCC TTTATCTCTGCTGGGTCAAGGAATTACCGACATAGAGATTCACTTTCTTCAAATTAAGTT CACAGCAATTGGGGTTTACCTGGATGCTGAAATTGTGTCACATCTTCAACAATGGAAGGC CAAGAAGGCAAGTGAACTCGCAGAAGATGATGACTTCTTTGATGCTCTTGTTTCTGCTCC TGTCGAGAAATTCATTAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCACAATATGGAGT GCAGCTTGAGAGTGCAGTGAGGGACAGATTGGCAGCTGATGACAAATATGAGGAAGAGGA GGAGGAAGCCTTGGAGAAAGTTGTCGAGTTCTTCCAATCAAAGTACTTCAAGAAGGACTC CGTCGTCACATTCCATTTTCCTGCAACTTCTAACACTGCTGAGATTGTGTTTAGCACTGA AGGGAAGGAAGAGTCGAAGATCAAAGTGGAGAACGCAAATGTGGTGGAGAATATCAAGAA ATGGTATTTGGGAGGGACGAGAGGGGTGTCTCCTTCGACCATCTCCTCCTTGGCCAACGC TCTCTCGG
3' Flanking Sequence	TGAGTTGACCAAGTGAGTAGACTAACTGAATCTGTAGTTCTGGGGATTTGCAATTGCAAG GCACTTTTTGAAGTTTGnGAAGTGGAAAAACCTGCTGTTTCTTGTGCTGTTTTATGTAAT AAAATCAATTATATGTAGAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 669

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	66.25	JPsnpHou00156	View

Sequence

>JPsnpHou00156 ID=JPsnpHou00156; Name=JPsnpHou00156; organism=Pyrus pyrifolia; type=genetic_marker; length=809bp
GTCCTACCTCCATCTCCCCAGCTTCCTGCTAATCATACCCCCAAATCACA
AAGCCATGGGCACTGAAGTTGTAATGGTGGATGAGGTCCCTTTTCCTCCT
CAGATCACAACCACCAAGCCTTTATCTCTGCTGGGTCAAGGAATTACCGA
CATAGAGATTCACTTTCTTCAAATTAAGTTCACAGCAATTGGGGTTTACC
TGGATGCTGAAATTGTGTCACATCTTCAACAATGGAAGGCCAAGAAGGCA
AGTGAACTCGCAGAAGATGATGACTTCTTTGATGCTCTTGTTTCTGCTCC
TGTCGAGAAATTCATTAGGGTTGTGGTGATCAAGGAGATCAAAGGGTCAC
AATATGGAGTGCAGCTTGAGAGTGCAGTGAGGGACAGATTGGCAGCTGAT
GACAAATATGAGGAAGAGGAGGAGGAAGCCTTGGAGAAAGTTGTCGAGTT
CTTCCAATCAAAGTACTTCAAGAAGGACTCCGTCGTCACATTCCATTTTC
CTGCAACTTCTAACACTGCTGAGATTGTGTTTAGCACTGAAGGGAAGGAA
GAGTCGAAGATCAAAGTGGAGAACGCAAATGTGGTGGAGAATATCAAGAA
ATGGTATTTGGGAGGGACGAGAGGGGTGTCTCCTTCGACCATCTCCTCCT
TGGCCAACGCTCTCTCGGsTGAGTTGACCAAGTGAGTAGACTAACTGAAT
CTGTAGTTCTGGGGATTTGCAATTGCAAGGCACTTTTTGAAGTTTGnGAA
GTGGAAAAACCTGCTGTTTCTTGTGCTGTTTTATGTAATAAAATCAATTA
TATGTAGAA