JPsnpHou00636, JPsnpHou00636 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00636
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	TTCCCTCTTGGCAAGATTGGACAGCATGTCGGTGACTGGGAGCACTTCACACTCCGCATC TGCAACTTTTCGGGAGAGCTCTGGAGCATATACTTCTCGCAGCACAGCGGTGGCAAATGG GTGGATGCATATGATTTGGAGTACATAGATGGGAACAAAGCCATTGTCTACTCATCCAAA AATGGACACGCGAGCTACCCTCATCCCGGGACTTACATTCAGGGGTCAGACAAGCTAGGC ATTGGGATAAGGAACGATGCTGCTCGTAGTAACTTATCTGTGGATTCAAGCGTCCTGTAT GAGATTGTTGCAGCCGAGTATCTTGGAGACGGGGTTGTGGCCGAGCCGTGTTGGCTGCAG TTTATGAGAGAGTGGGGTCCAACAATTGTGTACAATTCAAGAACTGAGCTTGATAAGGTG ATCAATCTTTTGCCTGTGATGTTTAAGTATAATTTGGAGGACATTTTTAGTAAGTTACCG GTTGAGCTTTACGGGGAGGAAGGTCCTACCGGGCCAAAAGAGAAGAACAATTGGGTGGGA GATGAGAGAAGCTAGGGTTTTGCATGCGTCAAGAATCACTGGTTGTAAGTTGCAACCCTA ATGTATCCATATTTGTCCATAGCTATTAATACGATTAGTAGAAACTCTGTTATAGTCATT TCTGTA
3' Flanking Sequence	ATTTAATGTAGTGTACGGATAGAGGAATATATAGAGTTGAACGTAGTAAAATGAGAAATT GAAAGTGTTCGTTGATAATTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 667

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	125.41	JPsnpHou00636	View

Sequence

>JPsnpHou00636 ID=JPsnpHou00636; Name=JPsnpHou00636; organism=Pyrus pyrifolia; type=genetic_marker; length=748bp
TTCCCTCTTGGCAAGATTGGACAGCATGTCGGTGACTGGGAGCACTTCAC
ACTCCGCATCTGCAACTTTTCGGGAGAGCTCTGGAGCATATACTTCTCGC
AGCACAGCGGTGGCAAATGGGTGGATGCATATGATTTGGAGTACATAGAT
GGGAACAAAGCCATTGTCTACTCATCCAAAAATGGACACGCGAGCTACCC
TCATCCCGGGACTTACATTCAGGGGTCAGACAAGCTAGGCATTGGGATAA
GGAACGATGCTGCTCGTAGTAACTTATCTGTGGATTCAAGCGTCCTGTAT
GAGATTGTTGCAGCCGAGTATCTTGGAGACGGGGTTGTGGCCGAGCCGTG
TTGGCTGCAGTTTATGAGAGAGTGGGGTCCAACAATTGTGTACAATTCAA
GAACTGAGCTTGATAAGGTGATCAATCTTTTGCCTGTGATGTTTAAGTAT
AATTTGGAGGACATTTTTAGTAAGTTACCGGTTGAGCTTTACGGGGAGGA
AGGTCCTACCGGGCCAAAAGAGAAGAACAATTGGGTGGGAGATGAGAGAA
GCTAGGGTTTTGCATGCGTCAAGAATCACTGGTTGTAAGTTGCAACCCTA
ATGTATCCATATTTGTCCATAGCTATTAATACGATTAGTAGAAACTCTGT
TATAGTCATTTCTGTAmATTTAATGTAGTGTACGGATAGAGGAATATATA
GAGTTGAACGTAGTAAAATGAGAAATTGAAAGTGTTCGTTGATAATTT