JPsnpHou00427, JPsnpHou00427 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00427
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CCGGCTCGAATCTCACCCCAAATTTGCAGCCTCGACCGTCTCACCACCCTCGTTCTAGCC GACTGGAAGGGAGTCACCGGCAAGATTCCCCAATGCCTTGCCACCCTCTCCAATCTCCGA ATCCTTGTACCTTGTTGGAAACAAGATTTCGGGCGGGATTCCGGCCGATATCGGCAACCT CAAGATGCTTACGGTGCTCAACCTCGCCGATAACCAGATCTCCGGTTATATTCCGGCGAG TCTCGTGAGCCTCTCAGGGCTAATGCACCTGGACCTCAGCAACAACCAAATCTCGGGCGA GATACCGGCCGATTTCGGAAAACTCAAGATGCTCAGCCGGGCTCTGCTGTACCGGAACCA GCTCACCGGGTCAATCCCGGACTCCATCGGCAACATGAACCGGTTGGCCGACCTGGACCT GTCCAGGAACCAATTATCGGGTCGCGTACCGGATTGTCTCGGAAAAATGCGGGTTCTTTC GACGTTGAATCTGGACGGAAACTCGTTTTCTGGTCAATTACCGGCGTCCCTTTTGAGCAA TCGGGGTTTGGGGATCTTGAATATGAGCCGAAACGGGTTTGAAGGTAACATACCGGACGT TTTCCACGGAAATTCGTACTTTATGGTGCTCGATTTGTC
3' Flanking Sequence	TACAACAAATTGAAGGGTCCGATTCCCGGTTCGTTATCGTCGGCGAAATATATCGGGCAC TTGGATCTGAGCCACAACCACCTGTGCGGGGCGATTCCTGTGGGGAACCCGTTCGACCAC CTCGGAGCGTCGTCGTTTGCCAACAATGATTGCCTCTGCGGGAACCCGCTGAGTACCTGT TGATCGTATGGTTTCGGCCGGTTTGGATTGTATAAGTTATCGTATCGGTTCGTCTCGCTC CGAAGTTCCGGGCAAATGCACATTTTAATTTTATATAATTTCTGTGTAATTGTAAGATTT ATTACGTGGCTTAATCTCTTTTTTGTTTTAATTTTATAAAAAAGTATTAAGTTCTATACA ATTTGGTTGAAAAGGACAAGGGTAAAACAGAAATAGCAGATGCATGCACGTGAATTAATA GAGCATCACGTACAATAATTTTTTCGTTAAGATTGAGAGAGAGAGAGATAAGAAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 640

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	160.14	JPsnpHou00427	View

Sequence

>JPsnpHou00427 ID=JPsnpHou00427; Name=JPsnpHou00427; organism=Pyrus pyrifolia; type=genetic_marker; length=1115bp
CCGGCTCGAATCTCACCCCAAATTTGCAGCCTCGACCGTCTCACCACCCT
CGTTCTAGCCGACTGGAAGGGAGTCACCGGCAAGATTCCCCAATGCCTTG
CCACCCTCTCCAATCTCCGAATCCTTGTACCTTGTTGGAAACAAGATTTC
GGGCGGGATTCCGGCCGATATCGGCAACCTCAAGATGCTTACGGTGCTCA
ACCTCGCCGATAACCAGATCTCCGGTTATATTCCGGCGAGTCTCGTGAGC
CTCTCAGGGCTAATGCACCTGGACCTCAGCAACAACCAAATCTCGGGCGA
GATACCGGCCGATTTCGGAAAACTCAAGATGCTCAGCCGGGCTCTGCTGT
ACCGGAACCAGCTCACCGGGTCAATCCCGGACTCCATCGGCAACATGAAC
CGGTTGGCCGACCTGGACCTGTCCAGGAACCAATTATCGGGTCGCGTACC
GGATTGTCTCGGAAAAATGCGGGTTCTTTCGACGTTGAATCTGGACGGAA
ACTCGTTTTCTGGTCAATTACCGGCGTCCCTTTTGAGCAATCGGGGTTTG
GGGATCTTGAATATGAGCCGAAACGGGTTTGAAGGTAACATACCGGACGT
TTTCCACGGAAATTCGTACTTTATGGTGCTCGATTTGTCkTACAACAAAT
TGAAGGGTCCGATTCCCGGTTCGTTATCGTCGGCGAAATATATCGGGCAC
TTGGATCTGAGCCACAACCACCTGTGCGGGGCGATTCCTGTGGGGAACCC
GTTCGACCACCTCGGAGCGTCGTCGTTTGCCAACAATGATTGCCTCTGCG
GGAACCCGCTGAGTACCTGTTGATCGTATGGTTTCGGCCGGTTTGGATTG
TATAAGTTATCGTATCGGTTCGTCTCGCTCCGAAGTTCCGGGCAAATGCA
CATTTTAATTTTATATAATTTCTGTGTAATTGTAAGATTTATTACGTGGC
TTAATCTCTTTTTTGTTTTAATTTTATAAAAAAGTATTAAGTTCTATACA
ATTTGGTTGAAAAGGACAAGGGTAAAACAGAAATAGCAGATGCATGCACG
TGAATTAATAGAGCATCACGTACAATAATTTTTTCGTTAAGATTGAGAGA
GAGAGAGATAAGAAG