JPsnpHou00175, JPsnpHou00175 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00175
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GCCAACTTCGACTGCTCCTCCTCCGGCTTCTCCCTCCAGGCCATGGACTCCAGCCACGTG GCGCTCGTCGCCCTCCTCCTCAGATCCGAGGGCTTCGAGCACTACCGCTGCGACCGCAAC ATCTCCATGGGCATGAACCTCGGCAACATGTCCAAGATGCTCAGGTGCGCAGGAAATGAT GACATCATCACCATCAAGGCTGACGACGGCAGCGATACCGTCACCTTCATGTTCGAAAGC CCCACACAGGATAAAATTTCTGATTTTGAGATGAAGCTGATGGATATTGATAGCGAGCAC CTTGGAATTCCGGAGGCAGAATACCAGTCTATTGTGACAATGCCCTCTGCTGAGTTTGCT AGAATATGTAAAGACCTCAGTGGCATTGGTGATACTGTTGTGATATCTGTGACCAAGGAA GGAGTGAAGTTCTCTACAAGAGGGGATATTGGCACTGCTAACATTGTCTGTCGGCAGAAC ACTACCGTCGACAAGCCTGATGAAGCAACTGTCATAAATATGAGCGAGCCAGTGTCGTTG ACATTTGCTCTGAGGTACATGAACTCGTTCACAAAGGCTACCACATTGTCGAACACGGTC ACAATCAGCTTGTCTTCTGAACTTCCAGTTGTGGT
3' Flanking Sequence	GAGTACAAGATTGCAGAGATGGGCTACATTAGGTTCTACTTGGCTCCCAAGATAGAAGAT GACGAAGACGAAACAAAGCCTGAAGCTTGAGTGTTATGCCACATCATCATCAGCATACTC TTTTGCTGATGTAAACTGCTCTGTTTAAAAAGCCAGGTAGAGGATTTGTAATACGGGTTT TTTCTCGCTTTCTCTGTGACAATGAGTTAGCAAATCTGTAGTTTAGGAGTTTTTGAATCC ATTAGGTAAAGATGTTGTAGGTTTTCGATTGAAGACAATGTTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 636

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	117.32	JPsnpHou00175	View

Sequence

>JPsnpHou00175 ID=JPsnpHou00175; Name=JPsnpHou00175; organism=Pyrus pyrifolia; type=genetic_marker; length=919bp
GCCAACTTCGACTGCTCCTCCTCCGGCTTCTCCCTCCAGGCCATGGACTC
CAGCCACGTGGCGCTCGTCGCCCTCCTCCTCAGATCCGAGGGCTTCGAGC
ACTACCGCTGCGACCGCAACATCTCCATGGGCATGAACCTCGGCAACATG
TCCAAGATGCTCAGGTGCGCAGGAAATGATGACATCATCACCATCAAGGC
TGACGACGGCAGCGATACCGTCACCTTCATGTTCGAAAGCCCCACACAGG
ATAAAATTTCTGATTTTGAGATGAAGCTGATGGATATTGATAGCGAGCAC
CTTGGAATTCCGGAGGCAGAATACCAGTCTATTGTGACAATGCCCTCTGC
TGAGTTTGCTAGAATATGTAAAGACCTCAGTGGCATTGGTGATACTGTTG
TGATATCTGTGACCAAGGAAGGAGTGAAGTTCTCTACAAGAGGGGATATT
GGCACTGCTAACATTGTCTGTCGGCAGAACACTACCGTCGACAAGCCTGA
TGAAGCAACTGTCATAAATATGAGCGAGCCAGTGTCGTTGACATTTGCTC
TGAGGTACATGAACTCGTTCACAAAGGCTACCACATTGTCGAACACGGTC
ACAATCAGCTTGTCTTCTGAACTTCCAGTTGTGGTwGAGTACAAGATTGC
AGAGATGGGCTACATTAGGTTCTACTTGGCTCCCAAGATAGAAGATGACG
AAGACGAAACAAAGCCTGAAGCTTGAGTGTTATGCCACATCATCATCAGC
ATACTCTTTTGCTGATGTAAACTGCTCTGTTTAAAAAGCCAGGTAGAGGA
TTTGTAATACGGGTTTTTTCTCGCTTTCTCTGTGACAATGAGTTAGCAAA
TCTGTAGTTTAGGAGTTTTTGAATCCATTAGGTAAAGATGTTGTAGGTTT
TCGATTGAAGACAATGTTA