JPsnpHou00225, JPsnpHou00225 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00225
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GGGGGAATTGAATTGCTTTGGTTTCATATGTTCTGAGATTCATATTTGGTGCAGATATGG CTTCTCAGTCCCAATCTCAGCCACCAGCGCCGCCATCGAAGACATCGGCTCTGGCAGCTC CGCTAAGTGCATTAGGGTTCGAGCTTGAAGAGATAACCCCCAAAAAGGTCTCTGGTCGCC TCCATGTCACTGAAAATTGCGTCCAGCCATTCAAGGTGCTACATGGAGGGGTATCAGCAC TCATCTCTGAGGCCCTGGCTAGCATCGGAGCTCACATGGCCTCTGGTTTCCGAAGGGTGG CCGGGATTCACCTCAGCATCAACCATTTGAAGCGCGCCGAGCTCGGCGACCATATCTTTG CCGAAGCCTCCCCGGTCAACGTCGGCAAAACCATTCAGGTTTGGGAGGCGACAATATGGA AGATTGATCCTTCAAACTCAAACATCAAAACCATAGTATCCTCATCAAGAGTTACTCTTT TAAGCAACATGCCTGTGCCGGAGCACGCGAAAGACGCCGGTGAAATGCTCAAGAAGTATG CCAAACTATAAATTTTGATGTACCCTATTCATGTTCGACTCTGCTTGTTATGAAACCAAC AAAGAAATCAA
3' Flanking Sequence	GACGCTTTGAGTTAGCATTATATTCCAAACAAATTATCGCAGTCCAAATTAGGCAGGTCG ATCACACAAATGAGTTAGACCGAAAAATCATGATTCGACCTGACCTGCATATAAAGCACC CGTTTGACGGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 612

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	91.83	JPsnpHou00225	View

Sequence

>JPsnpHou00225 ID=JPsnpHou00225; Name=JPsnpHou00225; organism=Pyrus pyrifolia; type=genetic_marker; length=743bp
GGGGGAATTGAATTGCTTTGGTTTCATATGTTCTGAGATTCATATTTGGT
GCAGATATGGCTTCTCAGTCCCAATCTCAGCCACCAGCGCCGCCATCGAA
GACATCGGCTCTGGCAGCTCCGCTAAGTGCATTAGGGTTCGAGCTTGAAG
AGATAACCCCCAAAAAGGTCTCTGGTCGCCTCCATGTCACTGAAAATTGC
GTCCAGCCATTCAAGGTGCTACATGGAGGGGTATCAGCACTCATCTCTGA
GGCCCTGGCTAGCATCGGAGCTCACATGGCCTCTGGTTTCCGAAGGGTGG
CCGGGATTCACCTCAGCATCAACCATTTGAAGCGCGCCGAGCTCGGCGAC
CATATCTTTGCCGAAGCCTCCCCGGTCAACGTCGGCAAAACCATTCAGGT
TTGGGAGGCGACAATATGGAAGATTGATCCTTCAAACTCAAACATCAAAA
CCATAGTATCCTCATCAAGAGTTACTCTTTTAAGCAACATGCCTGTGCCG
GAGCACGCGAAAGACGCCGGTGAAATGCTCAAGAAGTATGCCAAACTATA
AATTTTGATGTACCCTATTCATGTTCGACTCTGCTTGTTATGAAACCAAC
AAAGAAATCAAwGACGCTTTGAGTTAGCATTATATTCCAAACAAATTATC
GCAGTCCAAATTAGGCAGGTCGATCACACAAATGAGTTAGACCGAAAAAT
CATGATTCGACCTGACCTGCATATAAAGCACCCGTTTGACGGA