JPsnpHou00551, JPsnpHou00551 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00551
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GTCTGCACTCTGAGAGTTCGGATGCCCATCTCATCTGACCTGAACAACCCTCGCAACTTC ATCACCAAGATCTCTCGTTATAACAAAGTGGTAAACATTCCTAACAGCATGACCATCTTG GATGAATTACTACCCATTTCCATTGACATGGCGAAGCGGAACTTGAGGGGCATATGGAAC TTCACAAACCCTGGCGTCGTGAGCCATAATGAGATCCTGGAGATGTACAAGAAGTACATT GACCCAAAGTTTACATGGGCTAACTTCACGCTCGAAGAGCAAGCCAAGGTTATAGTTGCA GCTCGAAGCAACAATGAAATGGACGCGTCCAAGTTGAAGGAAGAGTTCCCCGAGTTGCTA CCAATCAAGGAGTCGCTGATTAAGTATGTCTTTGAACCAAACAAGAAGGTGTAAGCAAAT TTCAGTCATAGAGCGCAGTATAACCTTCGACATCCACATTAGTAGGCGATATGCTTAGAT TACCTCCATTTAGTTTGATCAATATCACTCATTACTCATTCATACCTTGTCATTGTTTCC TCTATGCCTAGAGGGACCGAGTGTGCTTTCTCTGTTTTCGTCGGTGTATCTTACTTTCCT TGGCGTTCC
3' Flanking Sequence	TTTTACAAAAACTTTCGACGGGTTCGGTTCCCTATGGATATAATTCTGTAAGCTTTTTTG ACATTCTGTTCAATGAAGATGTGGAGATGAGGTGTTAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 610

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	217	JPsnpHou00551	View

Sequence

>JPsnpHou00551 ID=JPsnpHou00551; Name=JPsnpHou00551; organism=Pyrus pyrifolia; type=genetic_marker; length=708bp
GTCTGCACTCTGAGAGTTCGGATGCCCATCTCATCTGACCTGAACAACCC
TCGCAACTTCATCACCAAGATCTCTCGTTATAACAAAGTGGTAAACATTC
CTAACAGCATGACCATCTTGGATGAATTACTACCCATTTCCATTGACATG
GCGAAGCGGAACTTGAGGGGCATATGGAACTTCACAAACCCTGGCGTCGT
GAGCCATAATGAGATCCTGGAGATGTACAAGAAGTACATTGACCCAAAGT
TTACATGGGCTAACTTCACGCTCGAAGAGCAAGCCAAGGTTATAGTTGCA
GCTCGAAGCAACAATGAAATGGACGCGTCCAAGTTGAAGGAAGAGTTCCC
CGAGTTGCTACCAATCAAGGAGTCGCTGATTAAGTATGTCTTTGAACCAA
ACAAGAAGGTGTAAGCAAATTTCAGTCATAGAGCGCAGTATAACCTTCGA
CATCCACATTAGTAGGCGATATGCTTAGATTACCTCCATTTAGTTTGATC
AATATCACTCATTACTCATTCATACCTTGTCATTGTTTCCTCTATGCCTA
GAGGGACCGAGTGTGCTTTCTCTGTTTTCGTCGGTGTATCTTACTTTCCT
TGGCGTTCCrTTTTACAAAAACTTTCGACGGGTTCGGTTCCCTATGGATA
TAATTCTGTAAGCTTTTTTGACATTCTGTTCAATGAAGATGTGGAGATGA
GGTGTTAT