JPsnpHou00647, JPsnpHou00647 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00647
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CCCAGATCCATGTACCAGATCAAGTACCCCGCCCCCGGCTCCCCCCACCTAGCCAACCGC GTCAAGCAGCTGCTGACCTCGTCGGGCTTTGGACGCGTCGACGTGGACACCAAGCGGGGG CTGGACCACGGCTCCTGGGTCCCGCTCATGTTGATGTACCCGGAGGCAGACATCCCAGTT TGCCAGCTGTCGGTCCAGGCGGGGAGGGACGCCACTTATCACTACAACTTGGGGAAGGCG CTGGCCCCACTGAGGGACGAGGGTGTTCTTATAGTGGCGTCAGGCAGCGCCACCCACAAC TTGGGGGCGATGAGGAAGACCAAGAACAATGAGGTCTTCCCTTGGGCTCGCGAGTTTGAC ACGTGGCTCAAGAGGGCTATTCTGGAAGGAAGGTACGAGGATTTGAACCAGTGGGAGAAG AAGGCGCCGCATGCGAAAACGGCGCACCCTTGGCCGGATCACCTTTACCCGCTGCATATC GTGATGGGGGCTGCTGGTGCGGACGCAAAGGCTAAGCAAATCCATGACAGCTGGGACCTC GGTGCTGTTTCGTACGCAGCCTATCAGTTTACATCACCTTGAACTTGAGCTTGAGCTTGA TCTTGAAC
3' Flanking Sequence	ACCAGTTGCCGCTGATTAACTATATATGTCAAATAAATTCCTGTTATATTATGAATTTCA TAAAATAATATTATGTTGTGAACGAATTCATTGAATGTGTAGTAGTGAATATTGTATTAA GGATTAATGAGAGATTnGTTTCCCAGTTTAATTTCTCCATGGTTGTTGGTATTTGTATGA ATAATTTGTATTTAAACTAATTACTCAATTAATTAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 609

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	149.4	JPsnpHou00647	View

Sequence

>JPsnpHou00647 ID=JPsnpHou00647; Name=JPsnpHou00647; organism=Pyrus pyrifolia; type=genetic_marker; length=825bp
CCCAGATCCATGTACCAGATCAAGTACCCCGCCCCCGGCTCCCCCCACCT
AGCCAACCGCGTCAAGCAGCTGCTGACCTCGTCGGGCTTTGGACGCGTCG
ACGTGGACACCAAGCGGGGGCTGGACCACGGCTCCTGGGTCCCGCTCATG
TTGATGTACCCGGAGGCAGACATCCCAGTTTGCCAGCTGTCGGTCCAGGC
GGGGAGGGACGCCACTTATCACTACAACTTGGGGAAGGCGCTGGCCCCAC
TGAGGGACGAGGGTGTTCTTATAGTGGCGTCAGGCAGCGCCACCCACAAC
TTGGGGGCGATGAGGAAGACCAAGAACAATGAGGTCTTCCCTTGGGCTCG
CGAGTTTGACACGTGGCTCAAGAGGGCTATTCTGGAAGGAAGGTACGAGG
ATTTGAACCAGTGGGAGAAGAAGGCGCCGCATGCGAAAACGGCGCACCCT
TGGCCGGATCACCTTTACCCGCTGCATATCGTGATGGGGGCTGCTGGTGC
GGACGCAAAGGCTAAGCAAATCCATGACAGCTGGGACCTCGGTGCTGTTT
CGTACGCAGCCTATCAGTTTACATCACCTTGAACTTGAGCTTGAGCTTGA
TCTTGAACyACCAGTTGCCGCTGATTAACTATATATGTCAAATAAATTCC
TGTTATATTATGAATTTCATAAAATAATATTATGTTGTGAACGAATTCAT
TGAATGTGTAGTAGTGAATATTGTATTAAGGATTAATGAGAGATTnGTTT
CCCAGTTTAATTTCTCCATGGTTGTTGGTATTTGTATGAATAATTTGTAT
TTAAACTAATTACTCAATTAATTAC