JPsnpHou00133, JPsnpHou00133 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00133
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GTTTGTCTGAGTCTCCTAGGCACTTGGAGTGGCAAGCAAATGAAATTGGGTCGCAGGGCA ATCAACAATGCTACAAGTTTTAGTCTCTATACAAGCTCTTATTTTGAATGCAGAGCCCTT CTTCAATGAACCTGGGCATGAGTCATCGTATGTTGGAGCAGAAGGGCAAAGGCAATCCAG AAAGTACAATGAGGATACCTTTATTCTATCTCTAAAAACGATGATTTATACACTAAGGAG GCCGCCTAAGTATTTTGAGGACTTTGTCTTGGGTCATTTTCGCGAACGTGCACACAATAT TCTGGCAGCATGTAAAGCATATAGTGAGGGCACTCTGGTGGGGTCTGATATCACATCCCA GAATGCAGAAAAAGGTGGCTCCGCACAATTCAAGGCAAGTGTAGCTAAGATGATGAATAC ACTTGTTACACATTTCACCAGAAATGGATCAACCAACTGTGAGAAGTTTAGAGTTGAAGC CTCTCACATTTGACTAGCAGCTGACTTGATGGGATTGGGAAGGTAATAAGAATTATAGAT TGGCTTAGGAGAAACGAAATCTTTGGACCTGCGTATGGTATTTTCGTTTCCCATCTGCTT
3' Flanking Sequence	CnGATACTGGTATTCTGGAATTGGTTAGTTCGTTTTTCGGTCTGTTTTATCTTTCGGGAT TCTTGCTAGTACATATAAAGTATAGTAGGAAGACGTTGATGATGGATTCATGTTGAAGTG GACTTGGCTTATTGCTACATTGATCTAATTGTGAGTCACAATTTGTGACCTTGTTTATAG GCTTTTTTCAATTCTAGCCGAAACAATGTTTTATGTCC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 601

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG9	N/A	205.47	JPsnpHou00133	View

Sequence

>JPsnpHou00133 ID=JPsnpHou00133; Name=JPsnpHou00133; organism=Pyrus pyrifolia; type=genetic_marker; length=819bp
GTTTGTCTGAGTCTCCTAGGCACTTGGAGTGGCAAGCAAATGAAATTGGG
TCGCAGGGCAATCAACAATGCTACAAGTTTTAGTCTCTATACAAGCTCTT
ATTTTGAATGCAGAGCCCTTCTTCAATGAACCTGGGCATGAGTCATCGTA
TGTTGGAGCAGAAGGGCAAAGGCAATCCAGAAAGTACAATGAGGATACCT
TTATTCTATCTCTAAAAACGATGATTTATACACTAAGGAGGCCGCCTAAG
TATTTTGAGGACTTTGTCTTGGGTCATTTTCGCGAACGTGCACACAATAT
TCTGGCAGCATGTAAAGCATATAGTGAGGGCACTCTGGTGGGGTCTGATA
TCACATCCCAGAATGCAGAAAAAGGTGGCTCCGCACAATTCAAGGCAAGT
GTAGCTAAGATGATGAATACACTTGTTACACATTTCACCAGAAATGGATC
AACCAACTGTGAGAAGTTTAGAGTTGAAGCCTCTCACATTTGACTAGCAG
CTGACTTGATGGGATTGGGAAGGTAATAAGAATTATAGATTGGCTTAGGA
GAAACGAAATCTTTGGACCTGCGTATGGTATTTTCGTTTCCCATCTGCTT
kCnGATACTGGTATTCTGGAATTGGTTAGTTCGTTTTTCGGTCTGTTTTA
TCTTTCGGGATTCTTGCTAGTACATATAAAGTATAGTAGGAAGACGTTGA
TGATGGATTCATGTTGAAGTGGACTTGGCTTATTGCTACATTGATCTAAT
TGTGAGTCACAATTTGTGACCTTGTTTATAGGCTTTTTTCAATTCTAGCC
GAAACAATGTTTTATGTCC