JPsnpHou00510, JPsnpHou00510 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00510
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	TTCGGATAACGTGATTGCAGCGTCGGTGGTGGTGAATTCGGCGGTGAAGAACGCCAAGGA GCCATGGAAACATGTCTTCCATGTCGTGACTGATAAGATGAACCTTGGAAGCAATGCAGG TTATGTTTAAAAGCAAGGACTTATAATGGGTCACATGTTGAAGTGAAGGCTGTGGAGGAT TATAAGTTTTTGAATTCTTCATATGTGCCTGTGTTAAAGCAATTGGAAAACGCAAAGTTG CAATCATTTTACTTTGAGAATAAGCTCGAGAATGCAACCAAAGACGCAACAAACATGAAG TTCAGGAACCCCAAGTATTTGTCCATATTGAACCACTTGAGGTTTTATTTGCCTGAAATG TACCCGAAATTGCATAGGATTCTATTTTTGGATGACGATATAGTGGTTCAGAAGGATTTA ACTGGTCTGTGGAGGATTGATATGGATGGGAAGGTGAACGGGGCGGTTGAGACCTGTTTT GGGTCTTTCCATCGTTATGCACAGTACATGAATTTCTCACATCCTCTGATTAAGGAGAAG TTTAATCCTAATGCGTGCGCGTGGGCTTATGGAATGAACTTCTTTGATCTGGATGC
3' Flanking Sequence	TGGAGAAAGCAAAATTGTACTGCCGATTATCATTACTGGCAAAATCTGAACGAGAACCGT AGCCTGTGGAAATTGGGGACACTTCCGCCAGGTTTAATCACATTTTACTCGACAACAAAG CCACTAGACAAGTCATGGCACGTTCTGGGACTTGGCTATAATCCGAGCATCAGCATGGAC GAGATTCGCAATGCTGCAGTGGTGCACTTCAACGGGAATATGAAGCCTTGGCTTGATATT GCCATGAGCCAGTTCAAGCCACTCTGGGAAAAACACGTCAGTTATGATATGGAGTTCGTT CAGGCCTGCAATTTTGGTCTTTAAACGAACCGGATTTGTTGAAGCTCTAGTTGGAGAATC TGCCAATGCTAGTCCTACAGCTAGTAAGCTATCCCTCTTTTGGATTCCGTTGTTGCTCGT TGCACGTTTACTAATTATTCTTAGTATAGGGACGATATGCATCAATCTAAGTGTAGCATA CCTGTTTTCCATGCTAATCTAGGTCTTCTTTTTATTGTTTCATACAACTTAAGTTCACTT GGAAGATGATAATTACTGAAGTTGGTGGAAATTGACGGTAAACTTTCAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 597

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG5	N/A	58.94	JPsnpHou00510	View

Sequence

>JPsnpHou00510 ID=JPsnpHou00510; Name=JPsnpHou00510; organism=Pyrus pyrifolia; type=genetic_marker; length=1187bp
TTCGGATAACGTGATTGCAGCGTCGGTGGTGGTGAATTCGGCGGTGAAGA
ACGCCAAGGAGCCATGGAAACATGTCTTCCATGTCGTGACTGATAAGATG
AACCTTGGAAGCAATGCAGGTTATGTTTAAAAGCAAGGACTTATAATGGG
TCACATGTTGAAGTGAAGGCTGTGGAGGATTATAAGTTTTTGAATTCTTC
ATATGTGCCTGTGTTAAAGCAATTGGAAAACGCAAAGTTGCAATCATTTT
ACTTTGAGAATAAGCTCGAGAATGCAACCAAAGACGCAACAAACATGAAG
TTCAGGAACCCCAAGTATTTGTCCATATTGAACCACTTGAGGTTTTATTT
GCCTGAAATGTACCCGAAATTGCATAGGATTCTATTTTTGGATGACGATA
TAGTGGTTCAGAAGGATTTAACTGGTCTGTGGAGGATTGATATGGATGGG
AAGGTGAACGGGGCGGTTGAGACCTGTTTTGGGTCTTTCCATCGTTATGC
ACAGTACATGAATTTCTCACATCCTCTGATTAAGGAGAAGTTTAATCCTA
ATGCGTGCGCGTGGGCTTATGGAATGAACTTCTTTGATCTGGATGCrTGG
AGAAAGCAAAATTGTACTGCCGATTATCATTACTGGCAAAATCTGAACGA
GAACCGTAGCCTGTGGAAATTGGGGACACTTCCGCCAGGTTTAATCACAT
TTTACTCGACAACAAAGCCACTAGACAAGTCATGGCACGTTCTGGGACTT
GGCTATAATCCGAGCATCAGCATGGACGAGATTCGCAATGCTGCAGTGGT
GCACTTCAACGGGAATATGAAGCCTTGGCTTGATATTGCCATGAGCCAGT
TCAAGCCACTCTGGGAAAAACACGTCAGTTATGATATGGAGTTCGTTCAG
GCCTGCAATTTTGGTCTTTAAACGAACCGGATTTGTTGAAGCTCTAGTTG
GAGAATCTGCCAATGCTAGTCCTACAGCTAGTAAGCTATCCCTCTTTTGG
ATTCCGTTGTTGCTCGTTGCACGTTTACTAATTATTCTTAGTATAGGGAC
GATATGCATCAATCTAAGTGTAGCATACCTGTTTTCCATGCTAATCTAGG
TCTTCTTTTTATTGTTTCATACAACTTAAGTTCACTTGGAAGATGATAAT
TACTGAAGTTGGTGGAAATTGACGGTAAACTTTCAAA