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Marker Overview
Name | JPsnpHou00176 |
dbSNP ID | N/A |
Type | SNP |
SNP Alleles | A/G |
5' Flanking Sequence | TCCCAATCCATCATCCAAATGCCGACGAAACGACACCGCATCTCCGCCTCCGACGACAGC
CTCTTTTGCGACAGCTGGAGATTCTCCGTCGAGACCAACGACGCCGGGACCTGGTCCAAC
ATTCCGTCCAGGTGCGTCGGGTTCGTCCAGAACTACATGACCGGCGACCGGTACCTGTCC
GATTCGGCGGCCGTCGCGAATTTCTCGCTGAGCTTCGCGAAGGGGGTGACCATAGGCGGC
GATGGGAAGGACGCGTGGGTGTTCGACATCGATGAGACTCTGCTTTCGAATTTGCCCTAC
TATCAGGCACATGGATTCGGATCAGAGACGTTCGATGAAGCATCTTTCGATGAGTGGGTG
GAGTTGGCTGAGGCCCCTGCTCTCCCAGCAAGTTTAAATCTATACAGTCAGCTTGAGCGG
TTGGGTTTCAAGATTTTTCTGTTAACTGGGCGGAGCGAATATCAGAGAAATGCCACCGCG
AAAAACCTTCTAGTTGCAGGTTACAACAATTGGGAGAGGCTGCTGCTGAGAGGACCTTCT
GATCAAGGAACACTTGCCACGGTCTTCAAATCCCAGAAGAGATCG |
3' Flanking Sequence | nCTTGATAAATGAAGGTTATCGAATTCATGGGAGCTCGGGAGATCAATGGAGTGATTTGG
TGGGTTTTGCAATTGCTCAACGATCCTTTAAACTTCCAAACCCAATGTATTACATTGCCT
AGCAAATTACCAACATTCAGCAATTGTCTGTAATATAATTACATTCTTGTATTTTCCCTT
AAGTTCAATTGCCACAGTGATTAAAATTGGTTGCCATCGTTCGTCTGCTAACCCGGCGGC
GAGCCAATCCAATCCGGAGAACCTTGTATTTGTATTCATCTTTTCAAGTGGTATGAAAGT
CGGCTTGATTTAGAGTCGACAAAAAAAAAAAAAAAACTAAGNGACTAGCAACGACGACAC
AGGGAGT |
Species | Pyrus pyrifolia |
Publication | [view all] |
Contact | Toshiya Yamamoto
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Comment | SNP position in sequence: 586 |
Publications
Year | Publication |
2014 | Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863. |
Sequence
>JPsnpHou00176 ID=JPsnpHou00176; Name=JPsnpHou00176; organism=Pyrus pyrifolia; type=genetic_marker; length=953bp TCCCAATCCATCATCCAAATGCCGACGAAACGACACCGCATCTCCGCCTC CGACGACAGCCTCTTTTGCGACAGCTGGAGATTCTCCGTCGAGACCAACG ACGCCGGGACCTGGTCCAACATTCCGTCCAGGTGCGTCGGGTTCGTCCAG AACTACATGACCGGCGACCGGTACCTGTCCGATTCGGCGGCCGTCGCGAA TTTCTCGCTGAGCTTCGCGAAGGGGGTGACCATAGGCGGCGATGGGAAGG ACGCGTGGGTGTTCGACATCGATGAGACTCTGCTTTCGAATTTGCCCTAC TATCAGGCACATGGATTCGGATCAGAGACGTTCGATGAAGCATCTTTCGA TGAGTGGGTGGAGTTGGCTGAGGCCCCTGCTCTCCCAGCAAGTTTAAATC TATACAGTCAGCTTGAGCGGTTGGGTTTCAAGATTTTTCTGTTAACTGGG CGGAGCGAATATCAGAGAAATGCCACCGCGAAAAACCTTCTAGTTGCAGG TTACAACAATTGGGAGAGGCTGCTGCTGAGAGGACCTTCTGATCAAGGAA CACTTGCCACGGTCTTCAAATCCCAGAAGAGATCGrnCTTGATAAATGAA GGTTATCGAATTCATGGGAGCTCGGGAGATCAATGGAGTGATTTGGTGGG TTTTGCAATTGCTCAACGATCCTTTAAACTTCCAAACCCAATGTATTACA TTGCCTAGCAAATTACCAACATTCAGCAATTGTCTGTAATATAATTACAT TCTTGTATTTTCCCTTAAGTTCAATTGCCACAGTGATTAAAATTGGTTGC CATCGTTCGTCTGCTAACCCGGCGGCGAGCCAATCCAATCCGGAGAACCT TGTATTTGTATTCATCTTTTCAAGTGGTATGAAAGTCGGCTTGATTTAGA GTCGACAAAAAAAAAAAAAAAACTAAGNGACTAGCAACGACGACACAGGG AGT
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