JPsnpHou00441, JPsnpHou00441 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00441
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GTTTTGACTCATCAAACTTTACCGGAGTGAGGCAAGAAGGCATTAGCTCTGCTTCTGTGA ACTCGGGCTTCTTCACAACCATGGTTGCAGCAGGAGATGTGAAGGCTGTGTTCACAGGTC ACGATCACCTCAATGACTTCTGCGGGGAGCTAACTGGCATAAACCTTTGTTATGCTGGGG GATTTGGGTACCATGCTTATGGGAAGGCTGGATGGGAACGGAGAGCAAGGGTTGTGGTAG CAAACTTAGAGAAAACGAAAAGGGGAGGATGGGGAGTGGTCAAGTCAATCAAAACATGGA AGCGCCTTGATGATGAGCACCTCACTGCTATTGATGGTCAGGTTATCTGGAGCAAGAGCT CTGTAGGTATTCGTAGAAAACCTGTTGGCGGTAATTGAGTAACnAGCACAAGGCAAGAAA CGAGGCATAAGAAAGTTGTGGAAATCCTGGCGAGGAAATTGTCATTTGTTTCTTTGTAAT TTAACAGACAATAAATGAAATCTATCAAAAAAGGGAGTAATGTACTGTTTGTATGCTATG TAAGTGCATTCTGAAATAAGGTAAGCAGGACCCAGAAAAAT
3' Flanking Sequence	ATGTAACAAGGTTGATTGTCATTATACTATAGACCGGTTATCTAAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 582

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG1	N/A	82.13	JPsnpHou00441	View

Sequence

>JPsnpHou00441 ID=JPsnpHou00441; Name=JPsnpHou00441; organism=Pyrus pyrifolia; type=genetic_marker; length=628bp
GTTTTGACTCATCAAACTTTACCGGAGTGAGGCAAGAAGGCATTAGCTCT
GCTTCTGTGAACTCGGGCTTCTTCACAACCATGGTTGCAGCAGGAGATGT
GAAGGCTGTGTTCACAGGTCACGATCACCTCAATGACTTCTGCGGGGAGC
TAACTGGCATAAACCTTTGTTATGCTGGGGGATTTGGGTACCATGCTTAT
GGGAAGGCTGGATGGGAACGGAGAGCAAGGGTTGTGGTAGCAAACTTAGA
GAAAACGAAAAGGGGAGGATGGGGAGTGGTCAAGTCAATCAAAACATGGA
AGCGCCTTGATGATGAGCACCTCACTGCTATTGATGGTCAGGTTATCTGG
AGCAAGAGCTCTGTAGGTATTCGTAGAAAACCTGTTGGCGGTAATTGAGT
AACnAGCACAAGGCAAGAAACGAGGCATAAGAAAGTTGTGGAAATCCTGG
CGAGGAAATTGTCATTTGTTTCTTTGTAATTTAACAGACAATAAATGAAA
TCTATCAAAAAAGGGAGTAATGTACTGTTTGTATGCTATGTAAGTGCATT
CTGAAATAAGGTAAGCAGGACCCAGAAAAATrATGTAACAAGGTTGATTG
TCATTATACTATAGACCGGTTATCTAAC