JPsnpHou00290, JPsnpHou00290 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00290
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GCCATAAGGATCTCTGCCTTGTCAGAGGCTGGAGTTATCTATGTTATGACCCACGATTCA ATTGGGCTTGGAGAAGATGGACCAACCCATCAACCGATTGAGCACTTGGCAAGTTTCCGG GCAATGCCCAACATTTTGATGCTCCGCCCAGCTGATGGGAATGAGACTGCTGGGGCGTAC AGGGTTGCAGTCCTTAACAGGAAGAGACCTTCCATCCTTGCCCTCTCTCGACAAAAGTTG CCCAATCTTCCTGGAACTTCCATTGAGGGAGTCGAGAAGGGAGGCTACACAATATCAGAC AACTCTTCCGGTAACAAGCCAGATGTGATTTTGACGGCAACTGGATCTGAGTTGGAAATT GTTGCCAAAGCTGGCGATGAGCTCAGAAAAGAAGGGAAGACTGTTAGAGTTGTCTCCCTT GTTTCTTGGGAACTCTTTGATGATCAATCAGATGACTACAAGGAAAGTGTCTTCCCGGCT GCAGTAACAGCTAGGGTTAGCCTTGAGGCTGGATCAACATTCGGGTGGCACAAGATTGTT GGAAGCAAAGGAAAGGCGATTGGAATCGATAAATTTGGGGC
3' Flanking Sequence	AGTGCACCGGCTGGAAAAATATACAAGGGGTATGGCATCACTGTTGAGGCAGTTGTTGCA GCAGCAAAAGAAGTTAGCAGTTAAGATAACTGGTTATTTCGCAGATTTGGTTTTGGTTGG AGATCATCATCAGGGTAAAGAGGTCATATTCTTGTGATTTATTTCACGGGTACGGTCTCT TCTGTTTTAATAATAAAAATAATTTCGTTTTTCACGATGTTGCGTATAATTCTTGAATGA AAGCAACATAGATCAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAG G
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 582

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	113.31	JPsnpHou00290	View

Sequence

>JPsnpHou00290 ID=JPsnpHou00290; Name=JPsnpHou00290; organism=Pyrus pyrifolia; type=genetic_marker; length=883bp
GCCATAAGGATCTCTGCCTTGTCAGAGGCTGGAGTTATCTATGTTATGAC
CCACGATTCAATTGGGCTTGGAGAAGATGGACCAACCCATCAACCGATTG
AGCACTTGGCAAGTTTCCGGGCAATGCCCAACATTTTGATGCTCCGCCCA
GCTGATGGGAATGAGACTGCTGGGGCGTACAGGGTTGCAGTCCTTAACAG
GAAGAGACCTTCCATCCTTGCCCTCTCTCGACAAAAGTTGCCCAATCTTC
CTGGAACTTCCATTGAGGGAGTCGAGAAGGGAGGCTACACAATATCAGAC
AACTCTTCCGGTAACAAGCCAGATGTGATTTTGACGGCAACTGGATCTGA
GTTGGAAATTGTTGCCAAAGCTGGCGATGAGCTCAGAAAAGAAGGGAAGA
CTGTTAGAGTTGTCTCCCTTGTTTCTTGGGAACTCTTTGATGATCAATCA
GATGACTACAAGGAAAGTGTCTTCCCGGCTGCAGTAACAGCTAGGGTTAG
CCTTGAGGCTGGATCAACATTCGGGTGGCACAAGATTGTTGGAAGCAAAG
GAAAGGCGATTGGAATCGATAAATTTGGGGCrAGTGCACCGGCTGGAAAA
ATATACAAGGGGTATGGCATCACTGTTGAGGCAGTTGTTGCAGCAGCAAA
AGAAGTTAGCAGTTAAGATAACTGGTTATTTCGCAGATTTGGTTTTGGTT
GGAGATCATCATCAGGGTAAAGAGGTCATATTCTTGTGATTTATTTCACG
GGTACGGTCTCTTCTGTTTTAATAATAAAAATAATTTCGTTTTTCACGAT
GTTGCGTATAATTCTTGAATGAAAGCAACATAGATCAAAAAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGGTAGG