JPsnpHou00145, JPsnpHou00145 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00145
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AGAAGAAGGTGATGGTGGCGATCGACGAAAGCGAGTTTAGCCTATACGCCTTCAATTGGG CGCTCGAAAATCTGCGCGACACCATCCAGAGTTCGCAGCTAGTCGTGTTCACCGCACAGC CCATTGACTTCGCTTCCACTTATGCTGCCAGTTACGGAGCTGCCCCTGCTGAGTTGGTAA CATCTTTGCTTGAAAACCACAAGAAGGTGGCGCTGGCTTTGTTGGAGAGAGCTAAAGAAA TTTGTGCCAAACATGGGATTGTTGCAGAGACAGTGACAGAGGTAGGCGATCCGAAGGTGG TCATATGCGAAGCAGTAGAGAAACACAACATCCAGTTGCTTGTGTTAGGCAGCCACGGTC GCGGAGGTATCCAAAGGGCTTTTTTGGGAAGCGTAAGCAATTACTGCGTACATAACGCTA AGTGTCCTGTTCTTGTTGTGAGGAAACGGGATTGAAGACTTACATGTTCGCTTGTTCTTC AAGTTAATATCCAAAAACCAAACTTGCATCTTCCACAAGAAAATGTTGCGTGCTGCTTGA TAATTGTTGAAATTAGAGTCATGTAATAATAGGAAACTTC
3' Flanking Sequence	TGATTGAATAAAGCATGTATTTTATGGTTTGATTAAGTGACACGTGTTGGCCAACATCAA TGATTCATATCATGATTGTGGACTATACTTTGATTCAAAGCAACGTTCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 581

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	8.53	JPsnpHou00145	View

Sequence

>JPsnpHou00145 ID=JPsnpHou00145; Name=JPsnpHou00145; organism=Pyrus pyrifolia; type=genetic_marker; length=690bp
AGAAGAAGGTGATGGTGGCGATCGACGAAAGCGAGTTTAGCCTATACGCC
TTCAATTGGGCGCTCGAAAATCTGCGCGACACCATCCAGAGTTCGCAGCT
AGTCGTGTTCACCGCACAGCCCATTGACTTCGCTTCCACTTATGCTGCCA
GTTACGGAGCTGCCCCTGCTGAGTTGGTAACATCTTTGCTTGAAAACCAC
AAGAAGGTGGCGCTGGCTTTGTTGGAGAGAGCTAAAGAAATTTGTGCCAA
ACATGGGATTGTTGCAGAGACAGTGACAGAGGTAGGCGATCCGAAGGTGG
TCATATGCGAAGCAGTAGAGAAACACAACATCCAGTTGCTTGTGTTAGGC
AGCCACGGTCGCGGAGGTATCCAAAGGGCTTTTTTGGGAAGCGTAAGCAA
TTACTGCGTACATAACGCTAAGTGTCCTGTTCTTGTTGTGAGGAAACGGG
ATTGAAGACTTACATGTTCGCTTGTTCTTCAAGTTAATATCCAAAAACCA
AACTTGCATCTTCCACAAGAAAATGTTGCGTGCTGCTTGATAATTGTTGA
AATTAGAGTCATGTAATAATAGGAAACTTCrTGATTGAATAAAGCATGTA
TTTTATGGTTTGATTAAGTGACACGTGTTGGCCAACATCAATGATTCATA
TCATGATTGTGGACTATACTTTGATTCAAAGCAACGTTCT