JPsnpHou00182, JPsnpHou00182 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00182
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	TTTTCTCACCGGAAGCACGTAGGCTACTGTACAGGATGTTGGATCCAAATCCCAATTCTA GGATTTCCATAGCCAAAGTTAGGGAGAGTTCTTGGTACAGAAAGGGACCATACTCCAAAA ATATGAAATCTGAAATAGGAAACAAGGCTGTGGCTCGTACGAGTGCAGAAGCTTCTGGTT CCAGTGAGAATAGTATGGCTTCTGAGGAAAAGCAAGAACCAGGGAGACCTCCAAACATGA ATGCTTTTGATATTATCTCCCTTTCTGCCGGATTTGATCTGTCTGGCTTGTTTGAAAAAG ATCCTTTTCACAGAGAAGCAAGATTCACTTCCAGACAACCTGCTACGGTCATCATCTCCA AGTTAGAAGAAATGGCTAAGCAACTGGAGCTGAAAGTGAAGAAGAAGGATGATGGATTGT TGAAAATTGATGGATTAAAGGAAGGTAGAAAGGGGATTTTGTCCATAGATGCAGAGATAT TTGAAATCACTCCAACTTTTCATCTAGTCGAGGTGAAGAAATCAAGTGGGGATACATTGG AATTCCAGAAGATGTTGGACGACATAAGACCTGCTCTT
3' Flanking Sequence	GAGACATAGTCTGGGTTTGGCAAGGCGAGGAAGAGCAACAACAGCAAGAAATCCCGCTGC AGCAACAAGAAGAACAGCATCCTCCACGATAGTAACAAGTTGCCGGCATTCCCATGGTAT CTTATTTTTGTTGTACATTTTACAGTCTGCTAAGTTTTCAACTTTATATTTCTGTCCTTG CAATTGTCGTGACCGTCTTAATAAACTTGTTCTTCTTCGTATATGTACATGACCA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 579

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG3	N/A	110.14	JPsnpHou00182	View

Sequence

>JPsnpHou00182 ID=JPsnpHou00182; Name=JPsnpHou00182; organism=Pyrus pyrifolia; type=genetic_marker; length=814bp
TTTTCTCACCGGAAGCACGTAGGCTACTGTACAGGATGTTGGATCCAAAT
CCCAATTCTAGGATTTCCATAGCCAAAGTTAGGGAGAGTTCTTGGTACAG
AAAGGGACCATACTCCAAAAATATGAAATCTGAAATAGGAAACAAGGCTG
TGGCTCGTACGAGTGCAGAAGCTTCTGGTTCCAGTGAGAATAGTATGGCT
TCTGAGGAAAAGCAAGAACCAGGGAGACCTCCAAACATGAATGCTTTTGA
TATTATCTCCCTTTCTGCCGGATTTGATCTGTCTGGCTTGTTTGAAAAAG
ATCCTTTTCACAGAGAAGCAAGATTCACTTCCAGACAACCTGCTACGGTC
ATCATCTCCAAGTTAGAAGAAATGGCTAAGCAACTGGAGCTGAAAGTGAA
GAAGAAGGATGATGGATTGTTGAAAATTGATGGATTAAAGGAAGGTAGAA
AGGGGATTTTGTCCATAGATGCAGAGATATTTGAAATCACTCCAACTTTT
CATCTAGTCGAGGTGAAGAAATCAAGTGGGGATACATTGGAATTCCAGAA
GATGTTGGACGACATAAGACCTGCTCTTmGAGACATAGTCTGGGTTTGGC
AAGGCGAGGAAGAGCAACAACAGCAAGAAATCCCGCTGCAGCAACAAGAA
GAACAGCATCCTCCACGATAGTAACAAGTTGCCGGCATTCCCATGGTATC
TTATTTTTGTTGTACATTTTACAGTCTGCTAAGTTTTCAACTTTATATTT
CTGTCCTTGCAATTGTCGTGACCGTCTTAATAAACTTGTTCTTCTTCGTA
TATGTACATGACCA