JPsnpHou00499, JPsnpHou00499 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00499
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTAATTGCACATTTTACGGTACATCATGCAAGCTCCTTCAAGCACAGGAAAAAATCGCAA AAATCCGGTTTGTGGCCTGGTAGTTCAGCAATGCTTGGGAAGGCACTGCTGAAAAATGGA AGGTCATATGCACAGGAATCTGCACCTGATCCTCTCCTCTCACCATTTATCTGCAATATG TCTTTTCCAGACCCTAAAGGTATCCCCGAAGATGTTTGTTCCAATATCGATTCCCGTGTC ACTTGCGGCCTGAAAAGCGCCGAGCCATCTCTGCCAGATGAAGCTTGTGAAAAGGATAGA GAAGAGAGGAGGCAGAGGGCAACATTCGTGCAAGAGTTGATTGCATCAACCATATTCTTG GATATATGAACTCATCAGAATACGAAGCTTTCTGGAGGAGGCCGAGGACTGATCTTAGTC GCTAAGGACAGTGTATCATCCGGCACTCGCAGCACACACAGCGGAGCATGGTTTTAGGAA AGTAAGATAGTTCTATGTTAGGCAAGTAAGTAAGAGAGAAGTTGTCTTTGAGATGGACAA TATTTGTCTGCAGCAAGGCAATATGTGTACTATAT
3' Flanking Sequence	GTGTACAATGTGTCGTTAAATGTCTATTTATATATAAACAGACTTAGTTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 576

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	137.46	JPsnpHou00499	View

Sequence

>JPsnpHou00499 ID=JPsnpHou00499; Name=JPsnpHou00499; organism=Pyrus pyrifolia; type=genetic_marker; length=627bp
GTAATTGCACATTTTACGGTACATCATGCAAGCTCCTTCAAGCACAGGAA
AAAATCGCAAAAATCCGGTTTGTGGCCTGGTAGTTCAGCAATGCTTGGGA
AGGCACTGCTGAAAAATGGAAGGTCATATGCACAGGAATCTGCACCTGAT
CCTCTCCTCTCACCATTTATCTGCAATATGTCTTTTCCAGACCCTAAAGG
TATCCCCGAAGATGTTTGTTCCAATATCGATTCCCGTGTCACTTGCGGCC
TGAAAAGCGCCGAGCCATCTCTGCCAGATGAAGCTTGTGAAAAGGATAGA
GAAGAGAGGAGGCAGAGGGCAACATTCGTGCAAGAGTTGATTGCATCAAC
CATATTCTTGGATATATGAACTCATCAGAATACGAAGCTTTCTGGAGGAG
GCCGAGGACTGATCTTAGTCGCTAAGGACAGTGTATCATCCGGCACTCGC
AGCACACACAGCGGAGCATGGTTTTAGGAAAGTAAGATAGTTCTATGTTA
GGCAAGTAAGTAAGAGAGAAGTTGTCTTTGAGATGGACAATATTTGTCTG
CAGCAAGGCAATATGTGTACTATATyGTGTACAATGTGTCGTTAAATGTC
TATTTATATATAAACAGACTTAGTTTT