JPsnpHou00624, JPsnpHou00624 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00624
dbSNP ID	N/A
Type	SNP
SNP Alleles	C/G
5' Flanking Sequence	CGGGTATTGGGCGAAATTGCCGTTGATTCGGAGGCTGATGCTTTCGCATCCGGAGGTTGA GTGGATTTGGTGGATGGATAGTGATGCATTGTTTACTGACATGGTGTTTGAGATTCCGCT GTCGAAGTATGCTAGTCATAATCTAGTGATTCACGGGTACCCCGATTTGTTGTTTGATCA GAAGTCGTGGATTGCGCTGAACACCGGGAGTTTTCTGTTTAGGAATTGCCAGTGGTCTTT GGATTTGCTTGATGCTTGGGCTCCGATGGGTCCTAAGGGTCCAATAAGGGAGGAGGCCGG GAAGATTTTGACGGCTAATTTGAAGGGGAGGCCGGCATTTGAGGCGGATGATCAGTCTGC ATTGATATACTTGTTGCTTTCGCAGAAGGATCAGTGGATGGAGAAGGTGTACGTTGAGAA TTCGTATTATTTGCATGGTTACTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATCGA GAAGTATCATCCCGGTTTGGGTGATGAAAGGTGGCCGTTTGTGACCCATTTCGTGGGTTG CAAGCCCTGTGGAAGCTACGGAGATTACCC
3' Flanking Sequence	GTGGAGAGGTGCTTGAGCAGCATGGAGAGGGCATTTAATTTTGCAGATAACCAGGTGCTT AAGCTCTACGGGTTTAGGCACAGGGGTTTGTTGAGCCCTAAGATCAAGAGGATCAGGAAC GAGACAGCAGCCCCTCTAGAGTTTGTTGATCAGTATGATATTCGGCGGCATCCAGTGCAA GGGGGCAGTGGATCACACAGCTAGTGAGTAAAACATCCTCnTCGCCTCGAATGTTTGATT ATTTGGTAGGTCACGATGTAATACATGAGTTACAGAAGAAGATTTTAAACTCGATTACAG TTCGCGTTTTCCTTGTATTTTGTTTGTTCAGTTGTCTTTCTACTTGTTTCCAACTTTCGA GAACAATAGAACAGAATTCTTTTACAATCTTGATATCATTTTGTACTGTGTTCTAGTAAT CGTTGAAGTATCGACTGCATTATA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 571

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	141.95	JPsnpHou00624	View

Sequence

>JPsnpHou00624 ID=JPsnpHou00624; Name=JPsnpHou00624; organism=Pyrus pyrifolia; type=genetic_marker; length=1015bp
CGGGTATTGGGCGAAATTGCCGTTGATTCGGAGGCTGATGCTTTCGCATC
CGGAGGTTGAGTGGATTTGGTGGATGGATAGTGATGCATTGTTTACTGAC
ATGGTGTTTGAGATTCCGCTGTCGAAGTATGCTAGTCATAATCTAGTGAT
TCACGGGTACCCCGATTTGTTGTTTGATCAGAAGTCGTGGATTGCGCTGA
ACACCGGGAGTTTTCTGTTTAGGAATTGCCAGTGGTCTTTGGATTTGCTT
GATGCTTGGGCTCCGATGGGTCCTAAGGGTCCAATAAGGGAGGAGGCCGG
GAAGATTTTGACGGCTAATTTGAAGGGGAGGCCGGCATTTGAGGCGGATG
ATCAGTCTGCATTGATATACTTGTTGCTTTCGCAGAAGGATCAGTGGATG
GAGAAGGTGTACGTTGAGAATTCGTATTATTTGCATGGTTACTGGGCTGG
ATTGGTGGATCGGTATGAGGAGATGATCGAGAAGTATCATCCCGGTTTGG
GTGATGAAAGGTGGCCGTTTGTGACCCATTTCGTGGGTTGCAAGCCCTGT
GGAAGCTACGGAGATTACCCsGTGGAGAGGTGCTTGAGCAGCATGGAGAG
GGCATTTAATTTTGCAGATAACCAGGTGCTTAAGCTCTACGGGTTTAGGC
ACAGGGGTTTGTTGAGCCCTAAGATCAAGAGGATCAGGAACGAGACAGCA
GCCCCTCTAGAGTTTGTTGATCAGTATGATATTCGGCGGCATCCAGTGCA
AGGGGGCAGTGGATCACACAGCTAGTGAGTAAAACATCCTCnTCGCCTCG
AATGTTTGATTATTTGGTAGGTCACGATGTAATACATGAGTTACAGAAGA
AGATTTTAAACTCGATTACAGTTCGCGTTTTCCTTGTATTTTGTTTGTTC
AGTTGTCTTTCTACTTGTTTCCAACTTTCGAGAACAATAGAACAGAATTC
TTTTACAATCTTGATATCATTTTGTACTGTGTTCTAGTAATCGTTGAAGT
ATCGACTGCATTATA