JPsnpHou00216, JPsnpHou00216 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00216
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CACGCCACCAATGCATGGGATGAGGACGATGTTATTGTGATGGTGGCACCAAACGTTTTG TCAGCAGAGCACACAATGGAGAGGATGGATCTTGTTCATTCCTTGGTTGAGAAGGTTCGG ATTGATCTCAAAACGGGGATTGTTACAAGGCAGCCGATTTCGACCAGAAATCTGGATTTC GCCGTGATCAATCCGGCTTACCTGGGGAGGAAGAATAAGTATGTGTATGCAGCTGTGGGT GATCCCATGCCTAAGATATCAGGAGTTGTAAAATTGGATGTGTCCAATGCGGAGCACAAG GAGTGTGTTGTGGCCAGCAGGATGTTTGGGCCCGGGTGCTATGGGGGCGAGCCGTATTTC GTGGCCAGAGAGCCCGAGAATCCTGAGGCGGACGAGGACGACGGGTTTTTGGTGTCGTAT GTTCACGATGAGAAGGCCGGGGAATCGAGGTTCTTGGTGATGGATGCAAAGTCTCCTCTG CTTGACATTGTGGCTGCTGTGAGGATGCCCCGGCGGGTGCCTTATGGCTTCCACGGACTC TTTGTGAGGGAAAGTGATCTCAA
3' Flanking Sequence	AAGTTGTAGTTTCATATGTCCCCATGAAGCAACATAGCACACGTTACACAAACAATTATA AGTATGAAGTATATTGTACATATTTATATTTTACAATAAAGCTTCCAATAAAAAATAAAA GTTTAAAATA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 564

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	46.69	JPsnpHou00216	View

Sequence

>JPsnpHou00216 ID=JPsnpHou00216; Name=JPsnpHou00216; organism=Pyrus pyrifolia; type=genetic_marker; length=694bp
CACGCCACCAATGCATGGGATGAGGACGATGTTATTGTGATGGTGGCACC
AAACGTTTTGTCAGCAGAGCACACAATGGAGAGGATGGATCTTGTTCATT
CCTTGGTTGAGAAGGTTCGGATTGATCTCAAAACGGGGATTGTTACAAGG
CAGCCGATTTCGACCAGAAATCTGGATTTCGCCGTGATCAATCCGGCTTA
CCTGGGGAGGAAGAATAAGTATGTGTATGCAGCTGTGGGTGATCCCATGC
CTAAGATATCAGGAGTTGTAAAATTGGATGTGTCCAATGCGGAGCACAAG
GAGTGTGTTGTGGCCAGCAGGATGTTTGGGCCCGGGTGCTATGGGGGCGA
GCCGTATTTCGTGGCCAGAGAGCCCGAGAATCCTGAGGCGGACGAGGACG
ACGGGTTTTTGGTGTCGTATGTTCACGATGAGAAGGCCGGGGAATCGAGG
TTCTTGGTGATGGATGCAAAGTCTCCTCTGCTTGACATTGTGGCTGCTGT
GAGGATGCCCCGGCGGGTGCCTTATGGCTTCCACGGACTCTTTGTGAGGG
AAAGTGATCTCAAyAAGTTGTAGTTTCATATGTCCCCATGAAGCAACATA
GCACACGTTACACAAACAATTATAAGTATGAAGTATATTGTACATATTTA
TATTTTACAATAAAGCTTCCAATAAAAAATAAAAGTTTAAAATA