JPsnpHou00170, JPsnpHou00170 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00170
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAGAAGAGAGAGAAACCAGCCATGGTGAAGTTTCTGAAGCCAAACAAGGCGGTGATCAAC CTCCAGGGCCGCTACGCCGGGCGCAAGGCCGTCATCGTACGCGCCTTCGACGAGGGCACC CGCGACCGTCCCTACGGCCACTGTTTGGTTGCGGGGATTAAGAAGTACCCAGGCAAGGTC ATCCGCAAGGACTCCGCCAAGAAGACGGCCAAGAAATCCAGAGTGAAGGCCTTCATCAAG CTCGTGAACTACCAGCACCTGATGCCAACGCGCTACACCCTGGACGTGGATCTCAAAGAC GTCGTCAACGTCGAGTGCTTGCAGACAAAGGACCAGAAGGTCACTGCTTTGAAGGAGGTC AAGAAGCGGTTCGAGGAGCGGTTCAAGACCGGGAAGAACAGGTGGTTCTTCACCAAGCTC AGGTTCTGAGGACCTTTCCATACGGCGCCGCACTGGAAATGGGGTCTGTCTGATTTTGGG TTTATGTTTTTTCGAGTTTAAGTTTAATTTTGAAATGAAATGAGACGTTTTTATGGATTT TATGGATTAATGTTTAGCTTGA
3' Flanking Sequence	TGATTAGATTTTGTATTACTGAGATGTTTAATTTTGGGTCTTTCTGGATTTTGCTTTATT TTCCTGCAATTTTTATCTCAGCATTGTTCTTTACAAAAAAAAAAAAAAACTAAACTAGAT AGTCGACGAGACACAACGGAGGTAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 563

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG9	N/A	48.42	JPsnpHou00170	View

Sequence

>JPsnpHou00170 ID=JPsnpHou00170; Name=JPsnpHou00170; organism=Pyrus pyrifolia; type=genetic_marker; length=708bp
GAGAAGAGAGAGAAACCAGCCATGGTGAAGTTTCTGAAGCCAAACAAGGC
GGTGATCAACCTCCAGGGCCGCTACGCCGGGCGCAAGGCCGTCATCGTAC
GCGCCTTCGACGAGGGCACCCGCGACCGTCCCTACGGCCACTGTTTGGTT
GCGGGGATTAAGAAGTACCCAGGCAAGGTCATCCGCAAGGACTCCGCCAA
GAAGACGGCCAAGAAATCCAGAGTGAAGGCCTTCATCAAGCTCGTGAACT
ACCAGCACCTGATGCCAACGCGCTACACCCTGGACGTGGATCTCAAAGAC
GTCGTCAACGTCGAGTGCTTGCAGACAAAGGACCAGAAGGTCACTGCTTT
GAAGGAGGTCAAGAAGCGGTTCGAGGAGCGGTTCAAGACCGGGAAGAACA
GGTGGTTCTTCACCAAGCTCAGGTTCTGAGGACCTTTCCATACGGCGCCG
CACTGGAAATGGGGTCTGTCTGATTTTGGGTTTATGTTTTTTCGAGTTTA
AGTTTAATTTTGAAATGAAATGAGACGTTTTTATGGATTTTATGGATTAA
TGTTTAGCTTGArTGATTAGATTTTGTATTACTGAGATGTTTAATTTTGG
GTCTTTCTGGATTTTGCTTTATTTTCCTGCAATTTTTATCTCAGCATTGT
TCTTTACAAAAAAAAAAAAAAACTAAACTAGATAGTCGACGAGACACAAC
GGAGGTAG