JPsnpHou00155, JPsnpHou00155 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00155
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTGCCACCCTTTGTTCCTTAGGAAGTATGGTCAAGCTTTAGAGGCTAAGGGAGATTTTGA TGGAGCTGAAGAGTTCTATTTTCGTGCTACACTAGCGAATCCTTCAGATGGTGAGGCTTT ATGTCAGTATGCTGAGCTGGTTTGGCAACTCCGTCATGACCAAGATAAAGCCTTGAGTTA CTTTGAACGTGCAGCTCAAGCTAGTCCTCATGACAGCAATGTTCTTGCAGCATATGCTAG TTTTTCTTTGGGAAATAGAGGATGACTCGGAAGATGATGAAGCATGTCGTGATGAGATTG AGGTGCAGGATGTCGCTGGCGATAGTGTGCCTGATACGGCAGTGGCTGGTTCAAGGAGTG ACGACCCCGAGGAGAATTACAAGATGATGATTGAAGAGAACCCTGACAATGCTTTGTTGC TAAGAAATTATGCTCAGTTCTTGTGGCAGTCCAAAGGAGATCTTCAAGGAGCAGAGGAGC ACTATTTGCGGGCAATACTAACTGATCTTGGGGACGGTGAGATCATGGCACAATATGCTA CACTGG
3' Flanking Sequence	GTGGGAACTTCATCATGACAGTAAGAAGGCACTGTCGTACTTTGAGCGAGCTGTTCAAGC TAATCCTGAAGATAGnTATGTTCTTGCGGCCTACGCTAAGTTCCTCTGGGAACATGAAGA AGATGAGGAGnACAGCGTATCGCAAGCTCACGTCCAAGTGCCTCCTGTACAAGGAGGAGC GGTGAGCGTTGGAAACGCCTGAATTGCTAACACAAATTGCTGGATTGGTGAATAAGTTCT AATGCTGTACGTAGATGTATTTCACTTTCAGAACGGTTAAGTGAACATTTTANGGTGAAA TTGTGCTTTTTGTAACTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 547

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG16	N/A	117.94	JPsnpHou00155	View

Sequence

>JPsnpHou00155 ID=JPsnpHou00155; Name=JPsnpHou00155; organism=Pyrus pyrifolia; type=genetic_marker; length=865bp
CTGCCACCCTTTGTTCCTTAGGAAGTATGGTCAAGCTTTAGAGGCTAAGG
GAGATTTTGATGGAGCTGAAGAGTTCTATTTTCGTGCTACACTAGCGAAT
CCTTCAGATGGTGAGGCTTTATGTCAGTATGCTGAGCTGGTTTGGCAACT
CCGTCATGACCAAGATAAAGCCTTGAGTTACTTTGAACGTGCAGCTCAAG
CTAGTCCTCATGACAGCAATGTTCTTGCAGCATATGCTAGTTTTTCTTTG
GGAAATAGAGGATGACTCGGAAGATGATGAAGCATGTCGTGATGAGATTG
AGGTGCAGGATGTCGCTGGCGATAGTGTGCCTGATACGGCAGTGGCTGGT
TCAAGGAGTGACGACCCCGAGGAGAATTACAAGATGATGATTGAAGAGAA
CCCTGACAATGCTTTGTTGCTAAGAAATTATGCTCAGTTCTTGTGGCAGT
CCAAAGGAGATCTTCAAGGAGCAGAGGAGCACTATTTGCGGGCAATACTA
ACTGATCTTGGGGACGGTGAGATCATGGCACAATATGCTACACTGGyGTG
GGAACTTCATCATGACAGTAAGAAGGCACTGTCGTACTTTGAGCGAGCTG
TTCAAGCTAATCCTGAAGATAGnTATGTTCTTGCGGCCTACGCTAAGTTC
CTCTGGGAACATGAAGAAGATGAGGAGnACAGCGTATCGCAAGCTCACGT
CCAAGTGCCTCCTGTACAAGGAGGAGCGGTGAGCGTTGGAAACGCCTGAA
TTGCTAACACAAATTGCTGGATTGGTGAATAAGTTCTAATGCTGTACGTA
GATGTATTTCACTTTCAGAACGGTTAAGTGAACATTTTANGGTGAAATTG
TGCTTTTTGTAACTA