JPsnpHou00236, JPsnpHou00236 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00236
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	CAAAGGCTGTGTCCCTTGTGCTGCCTCAACTCAAAGGCAAGCTCAACGGCATTGCCCTCC GTGTGCCGACACCTAATGTATCAGTGGTTGACCTTGTGATCAACGTTGCAAAGAAAGGTA TTTCAGCAGAAGATGTCAATGCAGCCTTCAGAAAGGCAGCGGACGGACCACTTAAGGGCA TATTGGCAGTGTGCGACGTTCCTCTTGTGTCTGTGGACTTCAGGTGCACTGATGTTTCCT CCACCATAGACTCCTCCTTGACCATGGTCATGGGTGATGATATGGTCAAGGTGGTGGCCT GGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACATTTGGTTGCAA GCAAGTGGCCAGGCGCGGCAGnAGTGGGAAGCGGAGACCCATTGGAGGATTTCTGCAAGA CAAACCCGGCAGACGAGGAGTGCAAAGTCTATGAAGCATAGACTAATGTTTTCGGCAGGG TTTAGCAGCATTTGTTATCAGCAAATGCTTAATTTGTAATGACAATTGAGGAGGGGGAAC AAAA
3' Flanking Sequence	CATCAAGTAAATTACAAATTAAGACAATTCTCTGAATGATTATCTTTTGAAATAATGATT ATCATCATCATCAGAGTTTTCTGTGCAAAACTTTGATTAGATTTTGCACACCAGAGAGAA TGAATGACTTTGTCCAATCCAACCACTGTTGTTCAAGTTAATAAAAAGCTTTCTACCATA CTACAAAAAAAAAAAAAAACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 545

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG6	N/A	26.12	JPsnpHou00236	View

Sequence

>JPsnpHou00236 ID=JPsnpHou00236; Name=JPsnpHou00236; organism=Pyrus pyrifolia; type=genetic_marker; length=746bp
CAAAGGCTGTGTCCCTTGTGCTGCCTCAACTCAAAGGCAAGCTCAACGGC
ATTGCCCTCCGTGTGCCGACACCTAATGTATCAGTGGTTGACCTTGTGAT
CAACGTTGCAAAGAAAGGTATTTCAGCAGAAGATGTCAATGCAGCCTTCA
GAAAGGCAGCGGACGGACCACTTAAGGGCATATTGGCAGTGTGCGACGTT
CCTCTTGTGTCTGTGGACTTCAGGTGCACTGATGTTTCCTCCACCATAGA
CTCCTCCTTGACCATGGTCATGGGTGATGATATGGTCAAGGTGGTGGCCT
GGTACGACAACGAATGGGGATACAGCCAAAGGGTTGTGGATTTGGCACAT
TTGGTTGCAAGCAAGTGGCCAGGCGCGGCAGnAGTGGGAAGCGGAGACCC
ATTGGAGGATTTCTGCAAGACAAACCCGGCAGACGAGGAGTGCAAAGTCT
ATGAAGCATAGACTAATGTTTTCGGCAGGGTTTAGCAGCATTTGTTATCA
GCAAATGCTTAATTTGTAATGACAATTGAGGAGGGGGAACAAAAkCATCA
AGTAAATTACAAATTAAGACAATTCTCTGAATGATTATCTTTTGAAATAA
TGATTATCATCATCATCAGAGTTTTCTGTGCAAAACTTTGATTAGATTTT
GCACACCAGAGAGAATGAATGACTTTGTCCAATCCAACCACTGTTGTTCA
AGTTAATAAAAAGCTTTCTACCATACTACAAAAAAAAAAAAAAACT