JPsnpHou00253, JPsnpHou00253 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00253
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTCCGGTTCATCAGGTCGTAACTACCAAGAAGCTGAAAATCCGTTGCCTAATCGTTTTCA TCCATGGGAAAGAGATCACATGCCTTCATTCTCGATGAATCAGGTAGACCGAGATCAAGG TTGGTCTGCTTTTAACCAAGGTGGCAGTGGTTCAGACTCGGCCATCAGAGGGAGCAGCTT CCGGCAAAGGCATGGGTCCGAGAGGTCATCCTCACAAAACCGGTCATAGGCTTTTCTCCT TATCCTTTGGTTGGTGAAGCAAACTACCGCTATCTATAACTGAAATCAAAAGTTATGTAT GCTTGAAAACGATATATAATGCTTGGCGTCTTGTCAAGTCATGACAAGACGCCAAAATAC TGTCAGTGTGGCTCGGAAAACGCTCCTTTTGCAGCCACATGGTGGTGTGATGGACATAAC ATTCGTCTAGTTTGTTCGCCATCAGGGGTATGAAAATAAGCTCATTGTGGATGGCAAAGT TATGATTCGAGCGTCTGCTTGGCCGTATTTTATGATTCTCGGGTCATCTGCAAATGTCC
3' Flanking Sequence	GGTTTTTATCTGGATGACCAGAACCAACTTTTGTTCAGGATAAGTAATGAGTGGGTCATT TATTTATGTCCGAAAACATATATTCCTGCnGTGCTTGGTTTCCTTTTGAACAATTGTTGG ATGGATGTACATGAAATCAAATATTTTCAGTTACTCTCCTGCCTATTGCTTGTATAGCCT GGCAACTAAAACAAATAATCTGCTTTTCACTGCAGATAAAAGTTAATTATTTATATTATA TTTGAT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 540

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG4	N/A	57.45	JPsnpHou00253	View

Sequence

>JPsnpHou00253 ID=JPsnpHou00253; Name=JPsnpHou00253; organism=Pyrus pyrifolia; type=genetic_marker; length=786bp
GTCCGGTTCATCAGGTCGTAACTACCAAGAAGCTGAAAATCCGTTGCCTA
ATCGTTTTCATCCATGGGAAAGAGATCACATGCCTTCATTCTCGATGAAT
CAGGTAGACCGAGATCAAGGTTGGTCTGCTTTTAACCAAGGTGGCAGTGG
TTCAGACTCGGCCATCAGAGGGAGCAGCTTCCGGCAAAGGCATGGGTCCG
AGAGGTCATCCTCACAAAACCGGTCATAGGCTTTTCTCCTTATCCTTTGG
TTGGTGAAGCAAACTACCGCTATCTATAACTGAAATCAAAAGTTATGTAT
GCTTGAAAACGATATATAATGCTTGGCGTCTTGTCAAGTCATGACAAGAC
GCCAAAATACTGTCAGTGTGGCTCGGAAAACGCTCCTTTTGCAGCCACAT
GGTGGTGTGATGGACATAACATTCGTCTAGTTTGTTCGCCATCAGGGGTA
TGAAAATAAGCTCATTGTGGATGGCAAAGTTATGATTCGAGCGTCTGCTT
GGCCGTATTTTATGATTCTCGGGTCATCTGCAAATGTCCyGGTTTTTATC
TGGATGACCAGAACCAACTTTTGTTCAGGATAAGTAATGAGTGGGTCATT
TATTTATGTCCGAAAACATATATTCCTGCnGTGCTTGGTTTCCTTTTGAA
CAATTGTTGGATGGATGTACATGAAATCAAATATTTTCAGTTACTCTCCT
GCCTATTGCTTGTATAGCCTGGCAACTAAAACAAATAATCTGCTTTTCAC
TGCAGATAAAAGTTAATTATTTATATTATATTTGAT