JPsnpHou00560, JPsnpHou00560 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00560
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	AAGAGTTGCTGCCATTTCTGGGTCTCTTCGTAAACGCTTCCTACAACCGCGGTCTCATTC GTTCTGCGATCGAGATAAGTGAGGCAACGGTGGAGGGCGTGCAAATAGAGTACGTAGACA TCTCGACGCTGCCACTGCTGAACACGGATCTGGAGGGAGACGGCACTTTTCCACCTGCCG TGGAAGCCTTTCGCCAGAAGATTCTGGAAGCTGATAGCATCCTCTTTGCTTCTCCTGAGT ACAATTACTCCATCGCCGCACCTCTAAAGAATGCAATTGACTGGGCATCTAGACCGCCGA ATGTTTGGGCTGACAAGGCTGCTGCAATTGTAAGTGCTGGAGGAGGCTTTGGCGGTGGAC GATCCCAATATCATCTTCGCCAAGTTGGAGTGTTTCTTGACCTTCATTTCATTAACAAGC CCGAGTTTTTCTTGAATGCATTCCAGCCTCCTGCAAAGTTTGACGATGATGGAAACTTGA TTGATGAACAGTCCAAGCAGAGGTTGAAGGAAGTTCTTTTAGCTTTGCAGTCA
3' Flanking Sequence	TGACTTTGAGACTTCAAAGAAAGTGAAnAGAGGCGCTGTTTCCTGTTTCGAACTGCTAAC TTCTAAGTCATTGCAGGTTCGAAACCAGAAACAGTCTCTTCATAAGCATGGTTAAGGCTG TGTACATCTGATTCTCTTTAAACTTGGCAATAGCAACGGCAATGGCTGTGTCGTTGCATA TATTTCAGGGAGGATGCTGAAACTGTTTGTGATTCTCAGAATAAAGGAATTGTGTATTTC AGGCTCTGCTGGCATTGCTAGAGTTTGATGCTTTATGGTTTATGGCTATGTGATGTGGTT TATTTCTTTCTGCCTTGGGAGTGCCTTTGGTGTTGGAACTTAGACCTTGGTGATTTGTTT GTATTTTCTCTACAATATCTAATGT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 534

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	9.2	JPsnpHou00560	View

Sequence

>JPsnpHou00560 ID=JPsnpHou00560; Name=JPsnpHou00560; organism=Pyrus pyrifolia; type=genetic_marker; length=919bp
AAGAGTTGCTGCCATTTCTGGGTCTCTTCGTAAACGCTTCCTACAACCGC
GGTCTCATTCGTTCTGCGATCGAGATAAGTGAGGCAACGGTGGAGGGCGT
GCAAATAGAGTACGTAGACATCTCGACGCTGCCACTGCTGAACACGGATC
TGGAGGGAGACGGCACTTTTCCACCTGCCGTGGAAGCCTTTCGCCAGAAG
ATTCTGGAAGCTGATAGCATCCTCTTTGCTTCTCCTGAGTACAATTACTC
CATCGCCGCACCTCTAAAGAATGCAATTGACTGGGCATCTAGACCGCCGA
ATGTTTGGGCTGACAAGGCTGCTGCAATTGTAAGTGCTGGAGGAGGCTTT
GGCGGTGGACGATCCCAATATCATCTTCGCCAAGTTGGAGTGTTTCTTGA
CCTTCATTTCATTAACAAGCCCGAGTTTTTCTTGAATGCATTCCAGCCTC
CTGCAAAGTTTGACGATGATGGAAACTTGATTGATGAACAGTCCAAGCAG
AGGTTGAAGGAAGTTCTTTTAGCTTTGCAGTCAwTGACTTTGAGACTTCA
AAGAAAGTGAAnAGAGGCGCTGTTTCCTGTTTCGAACTGCTAACTTCTAA
GTCATTGCAGGTTCGAAACCAGAAACAGTCTCTTCATAAGCATGGTTAAG
GCTGTGTACATCTGATTCTCTTTAAACTTGGCAATAGCAACGGCAATGGC
TGTGTCGTTGCATATATTTCAGGGAGGATGCTGAAACTGTTTGTGATTCT
CAGAATAAAGGAATTGTGTATTTCAGGCTCTGCTGGCATTGCTAGAGTTT
GATGCTTTATGGTTTATGGCTATGTGATGTGGTTTATTTCTTTCTGCCTT
GGGAGTGCCTTTGGTGTTGGAACTTAGACCTTGGTGATTTGTTTGTATTT
TCTCTACAATATCTAATGT