JPsnpHou00100, JPsnpHou00100 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00100
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	ACACTTGATCCAAAACCAATAGAGGGTGACTGGAACGGTGCAGGATGCCACACCAATTAC AGTACAAAGAGCATGAGGGAAGAAGGAGGCTTTGAAGTTATTAAGAAGGCCATTTTGAAT CTTTCCCTTCGCCACGGTGAGCACATTAGTGCTTACGGAGAAGGAAATGAGAGAAGGTTG ACAGGAAAGCATGAAACAGCCAGCATTAACACATTTTCTTGGGGAGTGGCTAATCGTGGT TGCTCAATCCGTGTTGGTCGTGAAACTGAGAAGCAAGGAAAAGGTTATCTGGAGGATCGT CGTCCAGCTTCAAACATGGACCCTTACATTGTGACCTCACTGCTGGCAGAAACTACATTG TTGTGGGAGCCAACCCTTGAGGCTGAAGCTCTTGCAGCTCAAAAGCTTGCATTGAACGTC TGAAACCAATTCGCTGAAGATAATCCACTGGGGCCTAAAACGCAGCTAATTGGGACAAAG CAGCAGCATATTCCTTCACCTTTTAAATCCTTTTGAGAAGTTCCTTTG
3' Flanking Sequence	AAATAAAGGTCCCATTGTCAGTGATTGTTCATGTCATGTTCAACTTTGTAGAATGTTTTC TTGTATCGAAGAAATCGTGTAGATCGGAGAGCCTTAATTGAATCATTTGACAGTTTATTG GATATTTTACGCAGCATATGAACTCTGGTTTTTGCATAAGAAATAAATTTTGGAACTGAA TCTACCCGTTAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 529

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG13	N/A	111.26	JPsnpHou00100	View

Sequence

>JPsnpHou00100 ID=JPsnpHou00100; Name=JPsnpHou00100; organism=Pyrus pyrifolia; type=genetic_marker; length=721bp
ACACTTGATCCAAAACCAATAGAGGGTGACTGGAACGGTGCAGGATGCCA
CACCAATTACAGTACAAAGAGCATGAGGGAAGAAGGAGGCTTTGAAGTTA
TTAAGAAGGCCATTTTGAATCTTTCCCTTCGCCACGGTGAGCACATTAGT
GCTTACGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAAACAGC
CAGCATTAACACATTTTCTTGGGGAGTGGCTAATCGTGGTTGCTCAATCC
GTGTTGGTCGTGAAACTGAGAAGCAAGGAAAAGGTTATCTGGAGGATCGT
CGTCCAGCTTCAAACATGGACCCTTACATTGTGACCTCACTGCTGGCAGA
AACTACATTGTTGTGGGAGCCAACCCTTGAGGCTGAAGCTCTTGCAGCTC
AAAAGCTTGCATTGAACGTCTGAAACCAATTCGCTGAAGATAATCCACTG
GGGCCTAAAACGCAGCTAATTGGGACAAAGCAGCAGCATATTCCTTCACC
TTTTAAATCCTTTTGAGAAGTTCCTTTGyAAATAAAGGTCCCATTGTCAG
TGATTGTTCATGTCATGTTCAACTTTGTAGAATGTTTTCTTGTATCGAAG
AAATCGTGTAGATCGGAGAGCCTTAATTGAATCATTTGACAGTTTATTGG
ATATTTTACGCAGCATATGAACTCTGGTTTTTGCATAAGAAATAAATTTT
GGAACTGAATCTACCCGTTAC