JPsnpHou00275, JPsnpHou00275 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00275
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGTTGATTGTGCAGAACCAGTACAGAGCAATCGCAGCACTGGAGCTAAGAGAAGGAAGTC CAGTTCTGTGAAGAGGTTTAAACAAGAGTCACAAGTGTCTGAACTGGGTGCTACACCAAA TGCAACAACCAGAGTCAGTGTTAGATATGGTGGTAGAGGTAGTCAATCAGGGGCAGAAAA TCTTGATTATGCTGGGGGAAATTCAAGTCGCAGGAATAAGATTGATGAATCCAGAAATGC AGTACGTATCACCAAGATAATAAAGCCAATAGGATACTCAACTTCAGTGTCAAACGACGT CCAGGATGTGTTAGTCACCTTTAAGGCAATGAGGTCCGACGGATCTGAAGTGATAGTGGA CAACAAGTCTCTCAAGGTTAATCATCCGCTTCTGTTGATCGATTTTTACGAGCAACATCT CCGATACAGTCCTACATTTTAATTCAAGGTGTAAATGGAGGATGCAACATGATAGCTAGA TCTGCATCATCTTTGTTGTCAGATGTACACAGCGTCGGAAATTCGGA
3' Flanking Sequence	TTGTCGGAGTTTGGATGAAAGTGCAGGTTAACAAATGTAGTTAAGTTTGGTGAACTCAGT CAATATACCAGTAGCCGATGGGCTTGTTGCTCTCTTGTCTCTCTCCTTCATTGACCACAG TATTTACTGTATTAGGTAAAGTGAGATTTGTTGTACCTGGATCCGCTTTATTTTATTTAT TGGTCAATAGTATCTGGATCTTTCTCGACT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 528

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	129.16	JPsnpHou00275	View

Sequence

>JPsnpHou00275 ID=JPsnpHou00275; Name=JPsnpHou00275; organism=Pyrus pyrifolia; type=genetic_marker; length=738bp
GGTTGATTGTGCAGAACCAGTACAGAGCAATCGCAGCACTGGAGCTAAGA
GAAGGAAGTCCAGTTCTGTGAAGAGGTTTAAACAAGAGTCACAAGTGTCT
GAACTGGGTGCTACACCAAATGCAACAACCAGAGTCAGTGTTAGATATGG
TGGTAGAGGTAGTCAATCAGGGGCAGAAAATCTTGATTATGCTGGGGGAA
ATTCAAGTCGCAGGAATAAGATTGATGAATCCAGAAATGCAGTACGTATC
ACCAAGATAATAAAGCCAATAGGATACTCAACTTCAGTGTCAAACGACGT
CCAGGATGTGTTAGTCACCTTTAAGGCAATGAGGTCCGACGGATCTGAAG
TGATAGTGGACAACAAGTCTCTCAAGGTTAATCATCCGCTTCTGTTGATC
GATTTTTACGAGCAACATCTCCGATACAGTCCTACATTTTAATTCAAGGT
GTAAATGGAGGATGCAACATGATAGCTAGATCTGCATCATCTTTGTTGTC
AGATGTACACAGCGTCGGAAATTCGGAmTTGTCGGAGTTTGGATGAAAGT
GCAGGTTAACAAATGTAGTTAAGTTTGGTGAACTCAGTCAATATACCAGT
AGCCGATGGGCTTGTTGCTCTCTTGTCTCTCTCCTTCATTGACCACAGTA
TTTACTGTATTAGGTAAAGTGAGATTTGTTGTACCTGGATCCGCTTTATT
TTATTTATTGGTCAATAGTATCTGGATCTTTCTCGACT