JPsnpHou00342, JPsnpHou00342 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00342
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CGAACAAGGAGGTTCCTCCGAAGGAATTTGATAGTCGAGTGGTAGAAGGTTTTCAAGTCA CCCCACTCTGGCATCAAGGTTCTATTCGTGATGACGGCTGGTCAGATTATGTGGAAACTG TGCCAACTGCTCGCTGGGAATACAGCACCCGCCCAATTTATGGATGGGGTGATGTTGGGT CTAAGCAGAAATCTACTGCTGGCTGGTTAGCAGCTTTTCCTGTATTTGAACCCCATTGGC AAATATGCATGGCTGGTGGATTGTCAACAGGTTGGATAGAGTGGGACGGTGAAAGATTTG AGTTTGAAGATGCTCCTTCTTATTCTGAAAAGAATTGGGGTGGAGCATTCCCAAGAAAAT GGTTCTGGGTTCAATGTAATGTTTTTGAAGGTGCTACTGGAGAAATTGCTCTGACATCAG GCGGCGGGTTGAGGCAACTACCTGGATTAACTGAGACTTTTGAAAATGCTGCTTTGATTG GAGTTCACTATGGGGGAAAATTTTATGAATTTGTCCCGTGGAATGGC
3' Flanking Sequence	TTGTTAGTTGGGAAGTTGCTCCTTGGGGTTACTGGTCCATTGCTGCAGAGAATGAAACAC ACATGGTTGAATTAGAGGCAACAACAGAGGATCCTGGTACAACGTTGCGTGCCCCAACAT CAGAAGCTGGACTTGCCCCAGCTTGTAAAGATACTTGTTTTGGTGATCTAAAATTGAAAA TGTGGGAAAGAAGATATGATGGCAGCAAGGGGAAGATGATATTGGATGTTACAAGTAACA TGGCCGCAGTGGAAGTTGGAGGAGGGCCATGGTTCAATACTTGGAAGGGCAAGACTACTA CACCCGAGCTCCTTAGCCGGGCTCTCAGAGTCCCCGTTGATGTGGAAGGGGTATAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 528

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	29.36	JPsnpHou00342	View

Sequence

>JPsnpHou00342 ID=JPsnpHou00342; Name=JPsnpHou00342; organism=Pyrus pyrifolia; type=genetic_marker; length=884bp
CGAACAAGGAGGTTCCTCCGAAGGAATTTGATAGTCGAGTGGTAGAAGGT
TTTCAAGTCACCCCACTCTGGCATCAAGGTTCTATTCGTGATGACGGCTG
GTCAGATTATGTGGAAACTGTGCCAACTGCTCGCTGGGAATACAGCACCC
GCCCAATTTATGGATGGGGTGATGTTGGGTCTAAGCAGAAATCTACTGCT
GGCTGGTTAGCAGCTTTTCCTGTATTTGAACCCCATTGGCAAATATGCAT
GGCTGGTGGATTGTCAACAGGTTGGATAGAGTGGGACGGTGAAAGATTTG
AGTTTGAAGATGCTCCTTCTTATTCTGAAAAGAATTGGGGTGGAGCATTC
CCAAGAAAATGGTTCTGGGTTCAATGTAATGTTTTTGAAGGTGCTACTGG
AGAAATTGCTCTGACATCAGGCGGCGGGTTGAGGCAACTACCTGGATTAA
CTGAGACTTTTGAAAATGCTGCTTTGATTGGAGTTCACTATGGGGGAAAA
TTTTATGAATTTGTCCCGTGGAATGGCrTTGTTAGTTGGGAAGTTGCTCC
TTGGGGTTACTGGTCCATTGCTGCAGAGAATGAAACACACATGGTTGAAT
TAGAGGCAACAACAGAGGATCCTGGTACAACGTTGCGTGCCCCAACATCA
GAAGCTGGACTTGCCCCAGCTTGTAAAGATACTTGTTTTGGTGATCTAAA
ATTGAAAATGTGGGAAAGAAGATATGATGGCAGCAAGGGGAAGATGATAT
TGGATGTTACAAGTAACATGGCCGCAGTGGAAGTTGGAGGAGGGCCATGG
TTCAATACTTGGAAGGGCAAGACTACTACACCCGAGCTCCTTAGCCGGGC
TCTCAGAGTCCCCGTTGATGTGGAAGGGGTATAC