JPsnpHou00331, JPsnpHou00331 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00331
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	AATGGGTCCTATCGAGGCTACAGCTCGGGCACTTGGGGATGCCTTATATGACGAGAATCT TGGGGAGCCTGTAGGCCAGGTCCTTGTCATATGTGGTCGCAACAAAAAGCTTGCGAACAA GTTGCTTTCAATCAACTGGAAGATCCCTGTCCAGGTGAAGGGGTTTGTGACTAAAATGGA GGAATGCATGGGAGCTTGCGACTGCATAATTACAAAGGCCGGTCCAGGAACTATTGCAGA AGCCATGATAAGAGGCCTCCCAATTATTCTGAACGATTACATTGCCGGACAGGAAGTTGG GAATGTACCATATGTCGTTGAAAATGGGTGCGGGAAATACTCTAAATCGCCGAAAAAGAT AGCAAGGATCGTTGCTGATTGGTTTGGTCCGAAAGCCAATGAGCTAAAGGCCATGTCGGA AAATGCATTGAAGTTGGCAAAGCCTGATTCTGTGTTCAAGATTGTTCATGATCTTCACGA GCTCGTTAGACAACGAAGCCTTGTACCGCAGTTATGTACAAC
3' Flanking Sequence	TAACCATATTTTTCCCCAACCATTTTTGTTTACAAGTCCTCTAATTGATCAAAACTAGGC CCTTCTTCCCTTCCCATGCCATTACCTTGTTATAATTTCACATTTAATACAATCTATCAG GCTATCAGCATGATTGTCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 523

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	8.76	JPsnpHou00331	View

Sequence

>JPsnpHou00331 ID=JPsnpHou00331; Name=JPsnpHou00331; organism=Pyrus pyrifolia; type=genetic_marker; length=662bp
AATGGGTCCTATCGAGGCTACAGCTCGGGCACTTGGGGATGCCTTATATG
ACGAGAATCTTGGGGAGCCTGTAGGCCAGGTCCTTGTCATATGTGGTCGC
AACAAAAAGCTTGCGAACAAGTTGCTTTCAATCAACTGGAAGATCCCTGT
CCAGGTGAAGGGGTTTGTGACTAAAATGGAGGAATGCATGGGAGCTTGCG
ACTGCATAATTACAAAGGCCGGTCCAGGAACTATTGCAGAAGCCATGATA
AGAGGCCTCCCAATTATTCTGAACGATTACATTGCCGGACAGGAAGTTGG
GAATGTACCATATGTCGTTGAAAATGGGTGCGGGAAATACTCTAAATCGC
CGAAAAAGATAGCAAGGATCGTTGCTGATTGGTTTGGTCCGAAAGCCAAT
GAGCTAAAGGCCATGTCGGAAAATGCATTGAAGTTGGCAAAGCCTGATTC
TGTGTTCAAGATTGTTCATGATCTTCACGAGCTCGTTAGACAACGAAGCC
TTGTACCGCAGTTATGTACAACwTAACCATATTTTTCCCCAACCATTTTT
GTTTACAAGTCCTCTAATTGATCAAAACTAGGCCCTTCTTCCCTTCCCAT
GCCATTACCTTGTTATAATTTCACATTTAATACAATCTATCAGGCTATCA
GCATGATTGTCT