JPsnpHou00270, JPsnpHou00270 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00270
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GGAAGATGTTGTCAAGATTGTTGACACATTCCCCGGTCAATCCATTGATTTCTTCGGTGC CCTAAGGGCTCGAGTTTATGACGATGAAGTGAGGAATTGGATTTCCGGTGTTGGAATTGA CGGCATTGGGAAGAAGCTTGTGAACTCAAAAGAAGGTCCCCCGACTTTCGATCAACCTAA GATGACTCTGGAGAAGCTCCTTCACTACGGACAAATGCTTGTCCAGGAGCAGGACAATGT GAAGAGAGTCCAACTGGCTGACAAGTACTTGGCCGATGCAGCCCTTGGAGATGCAAACCA GGACTCCATTAACCGAGGAGAATTCTATGGAAAGGCAGCCCAACAAGTTAACGTACCAGT CCCAGAAGGCTGCACTGATCGAACAGCTGCAAACTTTAACCCAGCAGCAAGGAGTGACGA TGGTAGCTGTCAGTACGAGTAATTGGAGCTGAAGAAAATAAATATTCTGTTTGCTGGGTT ATTGATGTTTTCTTTGTAATTTATGCTTGTATTTCTATGG
3' Flanking Sequence	GATTCTTGCAATTATTTCGTTTTAATTATTAAACTAGCTATTGATACTCCGGCTATTGAA AAGTCAATAAGAACTGAATGTTATGTTGTTnnAATTATGTACGTCATTGTCACAAACAAA ACTTACACAACGTAGTTATCAATACATTCGCGA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 521

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	56.56	JPsnpHou00270	View

Sequence

>JPsnpHou00270 ID=JPsnpHou00270; Name=JPsnpHou00270; organism=Pyrus pyrifolia; type=genetic_marker; length=674bp
GGAAGATGTTGTCAAGATTGTTGACACATTCCCCGGTCAATCCATTGATT
TCTTCGGTGCCCTAAGGGCTCGAGTTTATGACGATGAAGTGAGGAATTGG
ATTTCCGGTGTTGGAATTGACGGCATTGGGAAGAAGCTTGTGAACTCAAA
AGAAGGTCCCCCGACTTTCGATCAACCTAAGATGACTCTGGAGAAGCTCC
TTCACTACGGACAAATGCTTGTCCAGGAGCAGGACAATGTGAAGAGAGTC
CAACTGGCTGACAAGTACTTGGCCGATGCAGCCCTTGGAGATGCAAACCA
GGACTCCATTAACCGAGGAGAATTCTATGGAAAGGCAGCCCAACAAGTTA
ACGTACCAGTCCCAGAAGGCTGCACTGATCGAACAGCTGCAAACTTTAAC
CCAGCAGCAAGGAGTGACGATGGTAGCTGTCAGTACGAGTAATTGGAGCT
GAAGAAAATAAATATTCTGTTTGCTGGGTTATTGATGTTTTCTTTGTAAT
TTATGCTTGTATTTCTATGGrGATTCTTGCAATTATTTCGTTTTAATTAT
TAAACTAGCTATTGATACTCCGGCTATTGAAAAGTCAATAAGAACTGAAT
GTTATGTTGTTnnAATTATGTACGTCATTGTCACAAACAAAACTTACACA
ACGTAGTTATCAATACATTCGCGA