JPsnpHou00571, JPsnpHou00571 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00571
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GAAGAATTGAGAAATGGGTCCTCCGTAAGGCGTTCGATGATGAGGAGAAACCTTATCTGC CAAAGCACATTCTGTATAGGCAGAAAGAGCAGTTCAGTGATGGGGTCGGCTACAGTTGGA TTGATGGCCTGAAAGCCCATGCGGAACTCCATGTCACTGATAAGATGATGCTGAATGCTG AACGCATCTTCCCTCACAACACTCCTCATACAAAGGAAGCCTACTACTATCGAATGATTT TCGAGAGGTTCTTCCCACAGAACTCAGCCAGGAACACGGTGCCTGGAGGACCGAGTGTGG CCTGCAGCACAGCCACAGCTGTGGCATGGGATGCCGAATGGTCCAAAAATCTTGACCCGT CTGGTAGGGCTATACTTGAAGTGCACCATCAAGCTTATGACAAGCAGGGTGCACCGGTGA CTAGCGGCATTCCAGAGATCATCGACAATGTACCTCAGATGAAAGCGAGCACCGTGGGGC TCGCAATCCACAGCTAGTAACGCCCCAGAACGAGGAC
3' Flanking Sequence	TGAACCCTGAATTTTTAAGAAGGGTATCGTAGTAATCAAGAATTAAGGCACTnTGCAATG CCTTTCGATGTAAAAAAATGTAACGGGGGATCCGTAGTGTTGGTTTTAAACATGTTTGTG TGGnCATATGTTGTAGTTTTCTAAATGCAACATGTTCTAGTGTGTTGTCTAATGTTGCTG TGGAGATGTTTTTAAGGTTAGAACCTCTCTGTATTTTCCTTTTGCTTTCAGTCCTCTTTG TCTTTCACTTTGAATAATAAGACGATGATCCTGACAAATAAAAAAAAAAAAAAAAACTAG AGAC
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 518

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	50.49	JPsnpHou00571	View

Sequence

>JPsnpHou00571 ID=JPsnpHou00571; Name=JPsnpHou00571; organism=Pyrus pyrifolia; type=genetic_marker; length=822bp
GAAGAATTGAGAAATGGGTCCTCCGTAAGGCGTTCGATGATGAGGAGAAA
CCTTATCTGCCAAAGCACATTCTGTATAGGCAGAAAGAGCAGTTCAGTGA
TGGGGTCGGCTACAGTTGGATTGATGGCCTGAAAGCCCATGCGGAACTCC
ATGTCACTGATAAGATGATGCTGAATGCTGAACGCATCTTCCCTCACAAC
ACTCCTCATACAAAGGAAGCCTACTACTATCGAATGATTTTCGAGAGGTT
CTTCCCACAGAACTCAGCCAGGAACACGGTGCCTGGAGGACCGAGTGTGG
CCTGCAGCACAGCCACAGCTGTGGCATGGGATGCCGAATGGTCCAAAAAT
CTTGACCCGTCTGGTAGGGCTATACTTGAAGTGCACCATCAAGCTTATGA
CAAGCAGGGTGCACCGGTGACTAGCGGCATTCCAGAGATCATCGACAATG
TACCTCAGATGAAAGCGAGCACCGTGGGGCTCGCAATCCACAGCTAGTAA
CGCCCCAGAACGAGGACmTGAACCCTGAATTTTTAAGAAGGGTATCGTAG
TAATCAAGAATTAAGGCACTnTGCAATGCCTTTCGATGTAAAAAAATGTA
ACGGGGGATCCGTAGTGTTGGTTTTAAACATGTTTGTGTGGnCATATGTT
GTAGTTTTCTAAATGCAACATGTTCTAGTGTGTTGTCTAATGTTGCTGTG
GAGATGTTTTTAAGGTTAGAACCTCTCTGTATTTTCCTTTTGCTTTCAGT
CCTCTTTGTCTTTCACTTTGAATAATAAGACGATGATCCTGACAAATAAA
AAAAAAAAAAAAAACTAGAGAC