JPsnpHou00435, JPsnpHou00435 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00435
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GTCTACAGTTGCTGGATTCTTGTCGTTGTTTTACCCATACAAAGGGAAGTCCCTCCCACA AGCTGCTTTGTTCCAAAGCACTAGTTTCGTCGTATTCTTCAACATTTCTCTGCTTACAGC AGGACTAGCTGCGGCTCTGTTGCTATGGCCTACAATAACTGAGCAACTTCATCTCTCAAG AAATGTTCATCGCAATCTCGAAACAACCTGTCCAACTGCTAAGACCGGTCTCCTTGGTGG CGGTGCTTTTGTATCCCTTGATGCGTCGCTCTTTTGGTTGGTTGCCCTCATGTTAGCCGA CAATGCTCGAGAGGACTATTTTGAGGAGACAGAAAAGGATGTTAAGGGTGAATATGGACA GGTTTCTGCAATCGATTTCGATGGACATGCCAATATTAAAGGAAGTGCTTGAAGTGTGCT AGCGGCGCGAGAAGCTGCCATGATGTCTGTTTCATACGTACTCTTCTATTTCATATCTAT GTCCATAAGCTTGCATGTTGAGCAGCTTTATGTAG
3' Flanking Sequence	GGAAATGCATGTAGATACGATTCGAGACTGTTTGGTACTATCTGTTTGTGGTTGTGGATT TGCTAAAATTAAGCATGATGAACCTTTTATATTGACCTCTCCAACTCTTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 516

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG15	N/A	39.06	JPsnpHou00435	View

Sequence

>JPsnpHou00435 ID=JPsnpHou00435; Name=JPsnpHou00435; organism=Pyrus pyrifolia; type=genetic_marker; length=626bp
GTCTACAGTTGCTGGATTCTTGTCGTTGTTTTACCCATACAAAGGGAAGT
CCCTCCCACAAGCTGCTTTGTTCCAAAGCACTAGTTTCGTCGTATTCTTC
AACATTTCTCTGCTTACAGCAGGACTAGCTGCGGCTCTGTTGCTATGGCC
TACAATAACTGAGCAACTTCATCTCTCAAGAAATGTTCATCGCAATCTCG
AAACAACCTGTCCAACTGCTAAGACCGGTCTCCTTGGTGGCGGTGCTTTT
GTATCCCTTGATGCGTCGCTCTTTTGGTTGGTTGCCCTCATGTTAGCCGA
CAATGCTCGAGAGGACTATTTTGAGGAGACAGAAAAGGATGTTAAGGGTG
AATATGGACAGGTTTCTGCAATCGATTTCGATGGACATGCCAATATTAAA
GGAAGTGCTTGAAGTGTGCTAGCGGCGCGAGAAGCTGCCATGATGTCTGT
TTCATACGTACTCTTCTATTTCATATCTATGTCCATAAGCTTGCATGTTG
AGCAGCTTTATGTAGyGGAAATGCATGTAGATACGATTCGAGACTGTTTG
GTACTATCTGTTTGTGGTTGTGGATTTGCTAAAATTAAGCATGATGAACC
TTTTATATTGACCTCTCCAACTCTTA