JPsnpHou00318, JPsnpHou00318 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00318
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CCGGATTCGAACCCCTACCGTCGTCGTTTCCAATCGACTTCGGAATCCGCCGCCTCGACC ACGCCGTCGGCAACGTGGAGGATCTCAAGTCGGCGATATCGTACGTCAAGGGCTTCACCG GATTCCACGAGTTCGCCGAGTTCACCGCCGACGACGTCGGAACGAGCGAGAGCGGATTAA ACTCCGTCGTTTTGGCGAACAACGAGGAGATGGTGCTGCTTCCGATGAACGAGCCGGTGT ACGGGACGAAGAGGAAGAGCCAGATTCAGACGTACCTGGAGCACAACGAGGGGGCCGGAC TCCAGCATTTGGCGCTGGTGAGCGAGGACATATTCAGGACGCTGAGGGAGATGCGGAGCC GCAGCAGCGTCGGCGGATTTCAGTTCATGCCGAAGCCGCCGCCGACGTATTACGGGAATT TGAAGAAGAGGGCAGGGGATGTGCTGACGGATGAGCAGATTAAGGAGTGTGAGGAACTGG GGATTTTGGTGGATAGGGACGATCAGGGGAC
3' Flanking Sequence	CTGCTTCAGATTTTCACTAAGCCTGTTGGAGATAGGCCAACCATGTTCATAGAGATCATT CAGAGAGTTGGGTGCATGCTTAAGGACGAAGAAGGCAAGGTTCACCAGAAGGGTGGATGC GGTGGGTTTGGGAAGGGTAACTTCTCCGAGCTCTTCAAGTCCATCGAGGAGTATGAGAAG ACGCTCGAAGCCAAACAGACTGCAGACCCAGCAGCTGCGTGAATCGCCATCGTCTGCAAT ATTATAAAATGACTAAATAAGGCAGTTGCTGAAGCCAGGTTCGTTGTACTCATTTTAAGG ATGTTGAATGAGTAGTGTCATTTTGTGTATACCAAGCTGTATGTGTGTTACTGTTGGTGC CTATTGATTTATGCACAATGACACAAATGTTATTGCTAAATTATACTTGTGACAGTAATC AATCACCGGACTGGTTGCACTGTCGACGTGCTTGTAATGTGCAACGTTAAAGAGGAATAC AAATCAGAGTATTAAGTACTTTTAAAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 512

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	142.65	JPsnpHou00318	View

Sequence

>JPsnpHou00318 ID=JPsnpHou00318; Name=JPsnpHou00318; organism=Pyrus pyrifolia; type=genetic_marker; length=1029bp
CCGGATTCGAACCCCTACCGTCGTCGTTTCCAATCGACTTCGGAATCCGC
CGCCTCGACCACGCCGTCGGCAACGTGGAGGATCTCAAGTCGGCGATATC
GTACGTCAAGGGCTTCACCGGATTCCACGAGTTCGCCGAGTTCACCGCCG
ACGACGTCGGAACGAGCGAGAGCGGATTAAACTCCGTCGTTTTGGCGAAC
AACGAGGAGATGGTGCTGCTTCCGATGAACGAGCCGGTGTACGGGACGAA
GAGGAAGAGCCAGATTCAGACGTACCTGGAGCACAACGAGGGGGCCGGAC
TCCAGCATTTGGCGCTGGTGAGCGAGGACATATTCAGGACGCTGAGGGAG
ATGCGGAGCCGCAGCAGCGTCGGCGGATTTCAGTTCATGCCGAAGCCGCC
GCCGACGTATTACGGGAATTTGAAGAAGAGGGCAGGGGATGTGCTGACGG
ATGAGCAGATTAAGGAGTGTGAGGAACTGGGGATTTTGGTGGATAGGGAC
GATCAGGGGACyCTGCTTCAGATTTTCACTAAGCCTGTTGGAGATAGGCC
AACCATGTTCATAGAGATCATTCAGAGAGTTGGGTGCATGCTTAAGGACG
AAGAAGGCAAGGTTCACCAGAAGGGTGGATGCGGTGGGTTTGGGAAGGGT
AACTTCTCCGAGCTCTTCAAGTCCATCGAGGAGTATGAGAAGACGCTCGA
AGCCAAACAGACTGCAGACCCAGCAGCTGCGTGAATCGCCATCGTCTGCA
ATATTATAAAATGACTAAATAAGGCAGTTGCTGAAGCCAGGTTCGTTGTA
CTCATTTTAAGGATGTTGAATGAGTAGTGTCATTTTGTGTATACCAAGCT
GTATGTGTGTTACTGTTGGTGCCTATTGATTTATGCACAATGACACAAAT
GTTATTGCTAAATTATACTTGTGACAGTAATCAATCACCGGACTGGTTGC
ACTGTCGACGTGCTTGTAATGTGCAACGTTAAAGAGGAATACAAATCAGA
GTATTAAGTACTTTTAAAAAAAAAAAAAA