JPsnpHou00310, JPsnpHou00310 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00310
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	CTCAATTGCCCAATTAGGGTTTCTAGCTCCTCCTCCTTTTCTCTCGATTTACCAGACGCT ATGGGAGGAGGCAACGGTCAGAAGGCCAAGATGGCCCGCGAGAAGAACTTGGAGAAGCAG AAAGCTGCCGGCAAGGGAAGTCAACTTAAAACAAACGAGAAAGCCATGTCAATCCAGTGT AAGGTGTGTATGCAAGCATTTATGTGCACCACATCGGAAGTGAAATGCAGGGAGCATGCT GAGGCAAAGCATCCCAAGTCTGATGTCTACGCTTGTTTCCCTCATCTCAAGAAATGAAAG AACATTTGGTAAGAAGTTGCAGGGACAAATTGTGAACGTTGTGGCCCTCTATAGTAAAGC CTGGAATGAATTTACTGAGTTCTTCTAGAGCGATAGCTATTTAATACTGCTTGTGGAGTT GTTTTTGTGTGTATGTGATGTGTGTGAGTGAGGGAGAAAAGAAAGAGATGTATCTCCTTG TTGAAACGAAACTCGGTCTTA
3' Flanking Sequence	ATGATTGTGAATGTTGGTGTAACTCTTGAAAAGAGTGTGTTTCATGGAACCTTGGTTCAC GGCGTTGTGTTGTCTATACGGGTTGAGTGTTGAGTTTGTGGAACTGCTGTTTGTCAGGCA AATTCACACCAAACCTTGCCTCTTTGGTAATTAATTTGTGTGTCGAAGGTTCTGATAAGT TTCTTATTTGATTAACCCAGAAAAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 502

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG2	N/A	76.81	JPsnpHou00310	View

Sequence

>JPsnpHou00310 ID=JPsnpHou00310; Name=JPsnpHou00310; organism=Pyrus pyrifolia; type=genetic_marker; length=716bp
CTCAATTGCCCAATTAGGGTTTCTAGCTCCTCCTCCTTTTCTCTCGATTT
ACCAGACGCTATGGGAGGAGGCAACGGTCAGAAGGCCAAGATGGCCCGCG
AGAAGAACTTGGAGAAGCAGAAAGCTGCCGGCAAGGGAAGTCAACTTAAA
ACAAACGAGAAAGCCATGTCAATCCAGTGTAAGGTGTGTATGCAAGCATT
TATGTGCACCACATCGGAAGTGAAATGCAGGGAGCATGCTGAGGCAAAGC
ATCCCAAGTCTGATGTCTACGCTTGTTTCCCTCATCTCAAGAAATGAAAG
AACATTTGGTAAGAAGTTGCAGGGACAAATTGTGAACGTTGTGGCCCTCT
ATAGTAAAGCCTGGAATGAATTTACTGAGTTCTTCTAGAGCGATAGCTAT
TTAATACTGCTTGTGGAGTTGTTTTTGTGTGTATGTGATGTGTGTGAGTG
AGGGAGAAAAGAAAGAGATGTATCTCCTTGTTGAAACGAAACTCGGTCTT
AwATGATTGTGAATGTTGGTGTAACTCTTGAAAAGAGTGTGTTTCATGGA
ACCTTGGTTCACGGCGTTGTGTTGTCTATACGGGTTGAGTGTTGAGTTTG
TGGAACTGCTGTTTGTCAGGCAAATTCACACCAAACCTTGCCTCTTTGGT
AATTAATTTGTGTGTCGAAGGTTCTGATAAGTTTCTTATTTGATTAACCC
AGAAAAAAAAAAAAAA