JPsnpHou00330, JPsnpHou00330 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00330
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTTTCTCCCAATTTCTTCTCCAAAGGGTATCTGGCTGTGAGTCCACTTCAGAGGCCGGTT CGACATTCCATGTTTGTGAGGTTACCACGAAGAAGCCCGACTCTGCTGTGAAGAGAGCTC GGCAGGCCGAAAAGAGGAGGATTTACAACAAATCCCGCAAATCCGAAATCAAAACCCGGA TGAAGAAGGTTTTGGAAGCTCTGGATGGGTTGAAGAAGAAGCCAGATGCTGCACCCGAAG AGGTCCTTTCTATTGAGAAGCTCATTGGAGAGGCATACTCCATCATTGACAAAGCAGTTA AGGTGGGAACTCTGCACAGGAATACTGGAGCACGGAGAAAGTCTCGACTGGCTAGAAGAA AGAAGGCTGTTGAGATCCACCACGGCTGGTACACCCCAACTACAGAGACTGCTAGTGCCT GATAAAACTCCTTTGTTGGGTCAGTCGTTTACTATTTTGCCGTTGTAATGTGTAGCATTT GTCCTTTGAATGTATGCA
3' Flanking Sequence	CTCTCCTTTGTATGGTACATGATTAACCGTATTCATTTTTCTTCTAGTTCGCCAAATTTG TATACTTACTGTCAACAATGCGGATGTGCCGAATAGATTTTGGGTTTGAGTTATCTACAA GACTCCAGACTGTTGTTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 499

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG11	N/A	149.8	JPsnpHou00330	View

Sequence

>JPsnpHou00330 ID=JPsnpHou00330; Name=JPsnpHou00330; organism=Pyrus pyrifolia; type=genetic_marker; length=637bp
CTTTCTCCCAATTTCTTCTCCAAAGGGTATCTGGCTGTGAGTCCACTTCA
GAGGCCGGTTCGACATTCCATGTTTGTGAGGTTACCACGAAGAAGCCCGA
CTCTGCTGTGAAGAGAGCTCGGCAGGCCGAAAAGAGGAGGATTTACAACA
AATCCCGCAAATCCGAAATCAAAACCCGGATGAAGAAGGTTTTGGAAGCT
CTGGATGGGTTGAAGAAGAAGCCAGATGCTGCACCCGAAGAGGTCCTTTC
TATTGAGAAGCTCATTGGAGAGGCATACTCCATCATTGACAAAGCAGTTA
AGGTGGGAACTCTGCACAGGAATACTGGAGCACGGAGAAAGTCTCGACTG
GCTAGAAGAAAGAAGGCTGTTGAGATCCACCACGGCTGGTACACCCCAAC
TACAGAGACTGCTAGTGCCTGATAAAACTCCTTTGTTGGGTCAGTCGTTT
ACTATTTTGCCGTTGTAATGTGTAGCATTTGTCCTTTGAATGTATGCAyC
TCTCCTTTGTATGGTACATGATTAACCGTATTCATTTTTCTTCTAGTTCG
CCAAATTTGTATACTTACTGTCAACAATGCGGATGTGCCGAATAGATTTT
GGGTTTGAGTTATCTACAAGACTCCAGACTGTTGTTT