JPsnpHou00243, JPsnpHou00243 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00243
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	AAAACTGAGGAAGAAACTGACCAGACTAAGCCAGGGGATGGTAAGGATAAGACCCCGACT GATGCTAAGGAAACTCTAGGTGAGGAGAAAAAGGAAGATGCAGTAGAGGAAAAACCTGCA GAGGAAGCAGCTGAAAACAACAAAGAAGATGTTCCGCAAGCTGAGGGAGGACAAGCAGAT GGAACTAGTGACAAGAAACAGGATGACACAGCTACTGTGACTGTTGAAGCAAATGGGGCA GCAGAGAAAGAGAATCTGGATGGAACCGCACCTTCTATGGACGGAGAGATCAAAATGAAA CACGATGCAGCAGAGAACGATGGGAAATGCAATGCTCAAGCTGAAGAGAAGGTCAAGCCC AAGGATGGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAGTGGCGCAAGCGGATGCCCCT CTATAATTGAGCAGCTGAACATACTCTACCACCTCTCCGGTGAGCTGTTGAATGTTCTGT ACCATTTATTGCAGTTG
3' Flanking Sequence	GATTCTGTTACATCCATTGAACTTTGTTTCGCCCCCTTTGTTACAGTGACGCCGGGAGTT ATGGATGATTGTAATGTTAATGTTGTTAATGTTAGACTTAACTGTATCTAGGGAACCTAC CGGTCTGGTAGACTAGGTCTTACTTGTAGATTCTGCAACTCTGGTTAGATTGTAGAATGT AAGTGGTACTTATTGGACCGGTTGCGTTTTAGTCGTCGGTAGATGGTCACTTGGTACATT TTGTTTGTTAACTTGTTCCTTTGTTAATGCGACTAAAGTTTTAATTATACTTTAGTAAAA AAAAAAAAAACTAAGTAAGACGTAGTCCGAACGGACGACAACAGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 498

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	210.77	JPsnpHou00243	View

Sequence

>JPsnpHou00243 ID=JPsnpHou00243; Name=JPsnpHou00243; organism=Pyrus pyrifolia; type=genetic_marker; length=843bp
AAAACTGAGGAAGAAACTGACCAGACTAAGCCAGGGGATGGTAAGGATAA
GACCCCGACTGATGCTAAGGAAACTCTAGGTGAGGAGAAAAAGGAAGATG
CAGTAGAGGAAAAACCTGCAGAGGAAGCAGCTGAAAACAACAAAGAAGAT
GTTCCGCAAGCTGAGGGAGGACAAGCAGATGGAACTAGTGACAAGAAACA
GGATGACACAGCTACTGTGACTGTTGAAGCAAATGGGGCAGCAGAGAAAG
AGAATCTGGATGGAACCGCACCTTCTATGGACGGAGAGATCAAAATGAAA
CACGATGCAGCAGAGAACGATGGGAAATGCAATGCTCAAGCTGAAGAGAA
GGTCAAGCCCAAGGATGGGGAGGTTGTTGAAAATGGTAAGGTTGAGCAAG
TGGCGCAAGCGGATGCCCCTCTATAATTGAGCAGCTGAACATACTCTACC
ACCTCTCCGGTGAGCTGTTGAATGTTCTGTACCATTTATTGCAGTTGrGA
TTCTGTTACATCCATTGAACTTTGTTTCGCCCCCTTTGTTACAGTGACGC
CGGGAGTTATGGATGATTGTAATGTTAATGTTGTTAATGTTAGACTTAAC
TGTATCTAGGGAACCTACCGGTCTGGTAGACTAGGTCTTACTTGTAGATT
CTGCAACTCTGGTTAGATTGTAGAATGTAAGTGGTACTTATTGGACCGGT
TGCGTTTTAGTCGTCGGTAGATGGTCACTTGGTACATTTTGTTTGTTAAC
TTGTTCCTTTGTTAATGCGACTAAAGTTTTAATTATACTTTAGTAAAAAA
AAAAAAAACTAAGTAAGACGTAGTCCGAACGGACGACAACAGG