JPsnpHou00590, JPsnpHou00590 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00590
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	GAGAGAGGTGAAGGAAGAGATGTCCAAGTCCTCCTCCAACTCCAACTCCAATGACCACAT CTTGCTTCTCGTTTTCATCATCTCGGGGCTTGCAGTGCTCACTCCAATCCTTGCCACCGA CCACATTGTTGGAGCCAACCGTGGCTGGAATCCTGGCCAAAACTACACCCTCTGGGCCAA CAACCAAACTTTCTATGTTGGGGACCTTATTTCGTTTAGGTACCAAAAGAACCAGTACAA TGTGTTTGAAGTAAACCAAACAGGGTATGACAACTGCACCTTGGACGGTGCAGTTGGGAA CTGGAGCAGTGGCAAAGACTTCATCCCCCTCAATCAGGCCAAGAGGTATTACTTCATTTG TGGCAATGGCCAGTGCTACAATGGCATGAAGGTCTCTGTCCTTGTCCATCCTCTGCCTTC CCCCCCAAAGGCCGCCGTCAGTGCTCATAACTCTTCATCAGATGCTGCTGTCCTGGTGGT TCCTCAACAGGGATTTC
3' Flanking Sequence	GGCTTTGGCGGTTTCCTTGGCAATGCTGTGCTTTGGATTTGGATGGGTGTAGTGCTTGTG GTATAACTCAGGGAAGTGTACAATTTATTTGTTCTGAGTTCTTAATGTATGCTCATCAGA CTTTCACGTTATGTGATTTAGGCTGAAGTGTTCTGAGGTTTTTCCTTCTCCTCTCAACTG TGTTACCTGAACTTTATTTTCAAATGACTAGATTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 498

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	217.74	JPsnpHou00590	View

Sequence

>JPsnpHou00590 ID=JPsnpHou00590; Name=JPsnpHou00590; organism=Pyrus pyrifolia; type=genetic_marker; length=713bp
GAGAGAGGTGAAGGAAGAGATGTCCAAGTCCTCCTCCAACTCCAACTCCA
ATGACCACATCTTGCTTCTCGTTTTCATCATCTCGGGGCTTGCAGTGCTC
ACTCCAATCCTTGCCACCGACCACATTGTTGGAGCCAACCGTGGCTGGAA
TCCTGGCCAAAACTACACCCTCTGGGCCAACAACCAAACTTTCTATGTTG
GGGACCTTATTTCGTTTAGGTACCAAAAGAACCAGTACAATGTGTTTGAA
GTAAACCAAACAGGGTATGACAACTGCACCTTGGACGGTGCAGTTGGGAA
CTGGAGCAGTGGCAAAGACTTCATCCCCCTCAATCAGGCCAAGAGGTATT
ACTTCATTTGTGGCAATGGCCAGTGCTACAATGGCATGAAGGTCTCTGTC
CTTGTCCATCCTCTGCCTTCCCCCCCAAAGGCCGCCGTCAGTGCTCATAA
CTCTTCATCAGATGCTGCTGTCCTGGTGGTTCCTCAACAGGGATTTCrGG
CTTTGGCGGTTTCCTTGGCAATGCTGTGCTTTGGATTTGGATGGGTGTAG
TGCTTGTGGTATAACTCAGGGAAGTGTACAATTTATTTGTTCTGAGTTCT
TAATGTATGCTCATCAGACTTTCACGTTATGTGATTTAGGCTGAAGTGTT
CTGAGGTTTTTCCTTCTCCTCTCAACTGTGTTACCTGAACTTTATTTTCA
AATGACTAGATTT