JPsnpHou00513, JPsnpHou00513 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00513
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/T
5' Flanking Sequence	GCCGATTCCTGTTGCTTTCCAAGGGGCTCTTCTGGGTCTCTGGTTCTGCTTCTTTGCTGC AAGCTTCTGCTATACCAATGGGGAGACCATTGAGGTAGCTGGAGAACAAGCAGCAGCCAG AACTTTTTCAGAGTTGCAAAAAGCAGAAGCCGCAGAAGTCAATGAAGAAGAGAAATTTAA AGTGCTTGCACACAAGCCCTTCTTCAAGAAGCCACCTCTACCCAAGATTCCCATTGTAAA GAAGCCATTTCCACCAGAGCCCTTTTTCAAGAAGCCATTGCCACCCCACATCCCAATCTA CAAGAAGCCACTCCCTCCACCAGTTCCGGTCTTCAAGATTCCTCCCTTTAAGAAGCCGGA TTATCCGCCGGTTCCGGTTGTGGAAGTGAAGCCATTTCCGAAGAAGCCAATTTTCCCTCC ACTTACAAAATTCAAGAAGCCAATTCTACCACCTATTCCTGTTTACAAGAAGCCACTTCC TCCGCCAATTCCAGT
3' Flanking Sequence	TACAAGAAGCCATTTCCCGATCCTGTCTTCAAGAAGCCGATTCCAACATTCAAGAAGCCA TTTCCTCCACATCCATTCCTTGGGAAGCCATTTCCTCCCATTGTTCCCTAAAGCTAGACT AGCTAGTTTTCCCTTCCAAATAACAGATGAGTAGCGCAGGAAGGTATTTACGAGTATGTA ATAAAGTCCTACATGGATTGTAACTTTATTATCTTGAGATTTTGTGTTGTGTTGTTGTAC CTTTGGTTTTGCTGTTATGCAGCTACTTTGTAATACAAGCTTTGCATTAATAAATTAAAA ATATATATTACTTTTAAAAAAAAAAA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 496

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG7	N/A	5.2	JPsnpHou00513	View

Sequence

>JPsnpHou00513 ID=JPsnpHou00513; Name=JPsnpHou00513; organism=Pyrus pyrifolia; type=genetic_marker; length=822bp
GCCGATTCCTGTTGCTTTCCAAGGGGCTCTTCTGGGTCTCTGGTTCTGCT
TCTTTGCTGCAAGCTTCTGCTATACCAATGGGGAGACCATTGAGGTAGCT
GGAGAACAAGCAGCAGCCAGAACTTTTTCAGAGTTGCAAAAAGCAGAAGC
CGCAGAAGTCAATGAAGAAGAGAAATTTAAAGTGCTTGCACACAAGCCCT
TCTTCAAGAAGCCACCTCTACCCAAGATTCCCATTGTAAAGAAGCCATTT
CCACCAGAGCCCTTTTTCAAGAAGCCATTGCCACCCCACATCCCAATCTA
CAAGAAGCCACTCCCTCCACCAGTTCCGGTCTTCAAGATTCCTCCCTTTA
AGAAGCCGGATTATCCGCCGGTTCCGGTTGTGGAAGTGAAGCCATTTCCG
AAGAAGCCAATTTTCCCTCCACTTACAAAATTCAAGAAGCCAATTCTACC
ACCTATTCCTGTTTACAAGAAGCCACTTCCTCCGCCAATTCCAGTwTACA
AGAAGCCATTTCCCGATCCTGTCTTCAAGAAGCCGATTCCAACATTCAAG
AAGCCATTTCCTCCACATCCATTCCTTGGGAAGCCATTTCCTCCCATTGT
TCCCTAAAGCTAGACTAGCTAGTTTTCCCTTCCAAATAACAGATGAGTAG
CGCAGGAAGGTATTTACGAGTATGTAATAAAGTCCTACATGGATTGTAAC
TTTATTATCTTGAGATTTTGTGTTGTGTTGTTGTACCTTTGGTTTTGCTG
TTATGCAGCTACTTTGTAATACAAGCTTTGCATTAATAAATTAAAAATAT
ATATTACTTTTAAAAAAAAAAA