JPsnpHou00267, JPsnpHou00267 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00267
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/G
5' Flanking Sequence	CAGCATGGGATTCGGCTCCCTTATCCCGACAGAGAGCGAAAGGTCCTTGATGGAGCGCGT GAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAGGAGAAAATCGTAGACATAAG AGAGGAGATTTTGCGCAAGAGAAGAGCCGGAAAACTTCCTGGTGACACCACCTCTGTCCT AAAAGCTTGGTGGCAATCACATTCCAAATGGCCATATCCAACTGAGGAAGACAAGGCTAG GTTGGTACAGGAAACCGGTTTGCAATTGAAGCAGATAAACAATTGGTTCATCAATCAGCG GAAGAGGAACTGGCACAGCAATCCTTCTACCTCCACGGTTTTGAAGAGCAAGCGCAAAAG TAATGCAGGTGAAAACAGCAGTGGCGAGCGGTTTATATAAATTGGAATAGGAAATGAGAG CCAGTCGAGATATCGTTCGTGCGCTTCCACTACATTTACAATTCGAAGATAGAAACTCTG AATAGCG
3' Flanking Sequence	GAAGACTTCAGGGTTCCGGTGAAAACAATCATATATTGGTTTCTTCAGAAAGAAAAAGGC TCACTCTGATTCTGATGTTGCGATTATAAACCCGATATGAGCCnTTACACAGGTATGCTC AAAGGATGCAGAAGATCGAAGCGTATGTAATATCATATATCATTAGGAATTCAGGAGTAT TTAGGAATTGTGTTACTGAAACTGTGAATTGGATAGTCCACCAGAGGGCTTACAATTTTT TGTTTATATCTTCATTTTTGTGAATAAGGTTAGTGAGGGGTTGTGGGGGTGTACAAAGCA ATAACATGAGCTTTTGGTTCCTTACATTACACTAGTGATTACTGCTTTTTGTTGTTGAGA TAATAAATTTGTCAGTAAATTATAG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 488

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	115.65	JPsnpHou00267	View

Sequence

>JPsnpHou00267 ID=JPsnpHou00267; Name=JPsnpHou00267; organism=Pyrus pyrifolia; type=genetic_marker; length=873bp
CAGCATGGGATTCGGCTCCCTTATCCCGACAGAGAGCGAAAGGTCCTTGA
TGGAGCGCGTGAGGCAGGAGTTGAAGCATGAACTGAAACAGGGTTACAAG
GAGAAAATCGTAGACATAAGAGAGGAGATTTTGCGCAAGAGAAGAGCCGG
AAAACTTCCTGGTGACACCACCTCTGTCCTAAAAGCTTGGTGGCAATCAC
ATTCCAAATGGCCATATCCAACTGAGGAAGACAAGGCTAGGTTGGTACAG
GAAACCGGTTTGCAATTGAAGCAGATAAACAATTGGTTCATCAATCAGCG
GAAGAGGAACTGGCACAGCAATCCTTCTACCTCCACGGTTTTGAAGAGCA
AGCGCAAAAGTAATGCAGGTGAAAACAGCAGTGGCGAGCGGTTTATATAA
ATTGGAATAGGAAATGAGAGCCAGTCGAGATATCGTTCGTGCGCTTCCAC
TACATTTACAATTCGAAGATAGAAACTCTGAATAGCGrGAAGACTTCAGG
GTTCCGGTGAAAACAATCATATATTGGTTTCTTCAGAAAGAAAAAGGCTC
ACTCTGATTCTGATGTTGCGATTATAAACCCGATATGAGCCnTTACACAG
GTATGCTCAAAGGATGCAGAAGATCGAAGCGTATGTAATATCATATATCA
TTAGGAATTCAGGAGTATTTAGGAATTGTGTTACTGAAACTGTGAATTGG
ATAGTCCACCAGAGGGCTTACAATTTTTTGTTTATATCTTCATTTTTGTG
AATAAGGTTAGTGAGGGGTTGTGGGGGTGTACAAAGCAATAACATGAGCT
TTTGGTTCCTTACATTACACTAGTGATTACTGCTTTTTGTTGTTGAGATA
ATAAATTTGTCAGTAAATTATAG