JPsnpHou00380, JPsnpHou00380 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00380
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	TTTGAACTGGTTGTGGACTCGTAAAGAGAAAGACATTGCAATTGTTTCGCACAGTGGATT CTTGTTTCATACCTTGAGTGCTTTTGGAAATGATTGCCATCCGTCTATCAAGAGCGAAAT ATGCACTCACTTTGCTAATTGTGAGCTTCGTTCAGTGGTAATTGTCGATAGGAGTTTGCT GGGGTCTGATTCTTCAACAACTAATTATCCTGGGAAGATACCTCGCGGGCCTGATCTTCC TAGTGATGTTGCCGATGAGAAGCATTCGGAGAAGGGTGCTTCCAAGTAATTATAGCCAGT CCATGATGATGGATGGACAGCCTTCCATAAGTAATATGATTCTTCTGAAGCCTTGATTTT TCAGGGGCTGGTGGCTCATTTTTACACCGGAGACGGAAATTTAGTCGTTTTAAAAGGTTC GGGATAGCCTCGGATGGTCTCGGGCTAACCCGAATATTGTTGATTGTTTTACAAGTTACT TGTTTT
3' Flanking Sequence	AGATCACACTCTGTCTTCGTTGTCAGATAGACACAAATAGCAGACGTTCTTTGATTGGAA CATACTTATTTGTTAGTGTCATAAACGACAGCTTGAAGGGCAAGGTTTATAGTATGCCCC AGTGAAACTTGGACAATGTTTGATAATGCAAATATGAAACTTGTnnnnAGGTAAAAAAAA AAAAACCGAAGAACTAGACCAAGGACACAACAAGGGG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 487

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG8	N/A	151.27	JPsnpHou00380	View

Sequence

>JPsnpHou00380 ID=JPsnpHou00380; Name=JPsnpHou00380; organism=Pyrus pyrifolia; type=genetic_marker; length=704bp
TTTGAACTGGTTGTGGACTCGTAAAGAGAAAGACATTGCAATTGTTTCGC
ACAGTGGATTCTTGTTTCATACCTTGAGTGCTTTTGGAAATGATTGCCAT
CCGTCTATCAAGAGCGAAATATGCACTCACTTTGCTAATTGTGAGCTTCG
TTCAGTGGTAATTGTCGATAGGAGTTTGCTGGGGTCTGATTCTTCAACAA
CTAATTATCCTGGGAAGATACCTCGCGGGCCTGATCTTCCTAGTGATGTT
GCCGATGAGAAGCATTCGGAGAAGGGTGCTTCCAAGTAATTATAGCCAGT
CCATGATGATGGATGGACAGCCTTCCATAAGTAATATGATTCTTCTGAAG
CCTTGATTTTTCAGGGGCTGGTGGCTCATTTTTACACCGGAGACGGAAAT
TTAGTCGTTTTAAAAGGTTCGGGATAGCCTCGGATGGTCTCGGGCTAACC
CGAATATTGTTGATTGTTTTACAAGTTACTTGTTTTyAGATCACACTCTG
TCTTCGTTGTCAGATAGACACAAATAGCAGACGTTCTTTGATTGGAACAT
ACTTATTTGTTAGTGTCATAAACGACAGCTTGAAGGGCAAGGTTTATAGT
ATGCCCCAGTGAAACTTGGACAATGTTTGATAATGCAAATATGAAACTTG
TnnnnAGGTAAAAAAAAAAAAACCGAAGAACTAGACCAAGGACACAACAA
GGGG