JPsnpHou00400, JPsnpHou00400 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00400
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	GGGGAAAGGGAACGATCAGAATGTGAGCCGTATCAAGGAGTACAGGAAAAAGGTCGAGTC CGAGCTCTCTAGCATTTGCAGCGACATCATGAGGGTTATTGATGAACATCTCATTCCGTC GTGCACTGCTTTTGAATCCACTGTGTTTTTCTACAAAATGAAAGGAGATTATTATCGCTA CTTGGCGGAGTTTAAGACCGGTGATGACAGGAAAGAGGTTGCTGATCAGTCAATGAAAGC TTATCAGGCAGCTTCTAGTAAAGCAGAAACTGATTTACCCCCCACACATCCCATCAGACT GGGTTTGGCCTTGAACTTTTCTGTCTTTTATTATGAAATCTTGAACTCTCCGGAAAGGGC ATGTCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCAGAATTGGACACTTTGAGTGA GGAATCATACAAAGACAGCACCTTGATCATGCAGCTCTTGAGGGACAACCTTACATTGTG GAC
3' Flanking Sequence	TCTGACATTCCGGAGGATGGAGGCGACGATATACAGAAGGGGGACGGCTCTGCTAAACCT GGAGGTGAAGATGCAGAGTGAATGGAAGCGGCCTAGGGCTGGCCAGGGCTTGTGTAATTT TACGGATGGAGAAAGTCGATGCAAGGTCTCGTTTCTTTCTTATGGTGTTTGTTTTAATTT TCGCCTAGTGAGATTCTAGTTAAATGTT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 484

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG10	N/A	164.9	JPsnpHou00400	View

Sequence

>JPsnpHou00400 ID=JPsnpHou00400; Name=JPsnpHou00400; organism=Pyrus pyrifolia; type=genetic_marker; length=692bp
GGGGAAAGGGAACGATCAGAATGTGAGCCGTATCAAGGAGTACAGGAAAA
AGGTCGAGTCCGAGCTCTCTAGCATTTGCAGCGACATCATGAGGGTTATT
GATGAACATCTCATTCCGTCGTGCACTGCTTTTGAATCCACTGTGTTTTT
CTACAAAATGAAAGGAGATTATTATCGCTACTTGGCGGAGTTTAAGACCG
GTGATGACAGGAAAGAGGTTGCTGATCAGTCAATGAAAGCTTATCAGGCA
GCTTCTAGTAAAGCAGAAACTGATTTACCCCCCACACATCCCATCAGACT
GGGTTTGGCCTTGAACTTTTCTGTCTTTTATTATGAAATCTTGAACTCTC
CGGAAAGGGCATGTCACCTTGCAAAGCAAGCTTTTGATGAAGCTATCTCA
GAATTGGACACTTTGAGTGAGGAATCATACAAAGACAGCACCTTGATCAT
GCAGCTCTTGAGGGACAACCTTACATTGTGGACyTCTGACATTCCGGAGG
ATGGAGGCGACGATATACAGAAGGGGGACGGCTCTGCTAAACCTGGAGGT
GAAGATGCAGAGTGAATGGAAGCGGCCTAGGGCTGGCCAGGGCTTGTGTA
ATTTTACGGATGGAGAAAGTCGATGCAAGGTCTCGTTTCTTTCTTATGGT
GTTTGTTTTAATTTTCGCCTAGTGAGATTCTAGTTAAATGTT