JPsnpHou00474, JPsnpHou00474 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00474
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/C
5' Flanking Sequence	CTTTGGATAAATGGCTGCACCACATACCTAAGGGTGGTCGAAGCTTAGATTGGGCCATGA GAATGAAAATTGCCACAACTCTTGCTCAAGGAATTGCGTTCTTGCATGACAAGGTAAAAC CGCATGTCGTGCATCGTGATATCCGTGCCAGTAATGTACTGCTTGATGAAGATTTTGGAG CACATCTAATGGGGGTTGGTCTGTCAAAGTTTGTGCCGTATGAAGTGATGCACGAGAGGA CAGTGATGGCTGGTGGCACGTACGGGTACCTTGCTCCAGAATTTGTCTACAGAAATGAGC TTACAACAAAGAGTGATGTTTATAGCTTTGGTGTGCTGCTGCTTGAGATTGTGAGCGGAC GTAGACCTGCACAGGCCGTTGATTCGGTGGGTTGGCAGAGCATTTTTGAGTGGGCAACAC CTCTGGTGCAGGCTCATCGCTACCCGGATCTCCTGGACCCTCATATAACTGTTTCTTCT
3' Flanking Sequence	CTGAGATTCCGGAGGCTGGTGTCATTCAAAAGGTGGTCGACCTCGTCTATGCCTGTACAC AGCATGTCCCATCAATGCGCCCGAGGATGTCTCACATTGTTCATCAACTTCAACAGTTAG CCCAGACTCCTGTTCCAAAGTAGTTTAATTTAGCTTCGGGCTAGTATTTATCCGTAATTC TATGCAATAATGAGAGTTTGTAATTTGTAATTTTTATTCTCCAGTTGGTTAGGAGCCATA ACCGGAATATAAGGTTTAGGGTTTAGCACTCTAGAGGCCATAAGTTCTATGTATTCAGTA TTTAATCATAATATTTGTCTCTAGCAAGTTTTGTCGATATTTAACCAATGTCGGAAATAC CGACAAAATCTGTCGATTTTAGTTGAAATTTAAGAGAGAGTCTCTCTGACGTAGAGCTTA AGTA
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 480

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	16.52	JPsnpHou00474	View

Sequence

>JPsnpHou00474 ID=JPsnpHou00474; Name=JPsnpHou00474; organism=Pyrus pyrifolia; type=genetic_marker; length=904bp
CTTTGGATAAATGGCTGCACCACATACCTAAGGGTGGTCGAAGCTTAGAT
TGGGCCATGAGAATGAAAATTGCCACAACTCTTGCTCAAGGAATTGCGTT
CTTGCATGACAAGGTAAAACCGCATGTCGTGCATCGTGATATCCGTGCCA
GTAATGTACTGCTTGATGAAGATTTTGGAGCACATCTAATGGGGGTTGGT
CTGTCAAAGTTTGTGCCGTATGAAGTGATGCACGAGAGGACAGTGATGGC
TGGTGGCACGTACGGGTACCTTGCTCCAGAATTTGTCTACAGAAATGAGC
TTACAACAAAGAGTGATGTTTATAGCTTTGGTGTGCTGCTGCTTGAGATT
GTGAGCGGACGTAGACCTGCACAGGCCGTTGATTCGGTGGGTTGGCAGAG
CATTTTTGAGTGGGCAACACCTCTGGTGCAGGCTCATCGCTACCCGGATC
TCCTGGACCCTCATATAACTGTTTCTTCTyCTGAGATTCCGGAGGCTGGT
GTCATTCAAAAGGTGGTCGACCTCGTCTATGCCTGTACACAGCATGTCCC
ATCAATGCGCCCGAGGATGTCTCACATTGTTCATCAACTTCAACAGTTAG
CCCAGACTCCTGTTCCAAAGTAGTTTAATTTAGCTTCGGGCTAGTATTTA
TCCGTAATTCTATGCAATAATGAGAGTTTGTAATTTGTAATTTTTATTCT
CCAGTTGGTTAGGAGCCATAACCGGAATATAAGGTTTAGGGTTTAGCACT
CTAGAGGCCATAAGTTCTATGTATTCAGTATTTAATCATAATATTTGTCT
CTAGCAAGTTTTGTCGATATTTAACCAATGTCGGAAATACCGACAAAATC
TGTCGATTTTAGTTGAAATTTAAGAGAGAGTCTCTCTGACGTAGAGCTTA
AGTA