JPsnpHou00493, JPsnpHou00493 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00493
dbSNP ID	N/A
Type	SNP
SNP Alleles	A/C
5' Flanking Sequence	GGACTAGCATCGCCAAAACAAGCGGCGGATGATGTTCCGCCGCTGTTGCGCTGGCCTCCT AATCTTCAACTTCATCCTCCTCGTCACAATCCTCATCGTGTGGGCCGTCCTCCAGCCCTC CAAGCCCCGCTTCGTCCTCCAAGACGTCACCGTCTTCAACTTCAACACCTCCGCCTCCAA TGTCTTCTCCTCCAGCTTCCAGGTCACCATCTCCTCCCGAAACCCGAACGACAAGATCGG CATCTACTACGACAGGCTCAACGTCTACGCGACCTACCGTGCGCAGCAGATCACGTTCCC GACGCTCATCCCGCCGGTnTACCAAGGCCACAAGGACGGTCAACGATCTGGTCGCCGTTC ATCTACGGCACCGACGTCCCCATCGCTCCGTACAACTCCATCGCTCTGGGGCAGGACCAG AATGCCGGGTCGGTTCTTTTGCTCATCAAGATGGACGGCCGGGTCAGGTGGAAGGTCGG
3' Flanking Sequence	ACCTTCATCTCCGGTCGGTACCATTTGTACATCCGGTGCCCCGCTTTTATCGCTCTGGGT TCCAGGACCACCGGAGTTGAGGTCGGTAACAACGCCGTCAAGTACCAGCTGGTGCAGCGC TGCAAAGTGACCGTATGAAGAAATTGGAGGCAAAACTGATGTGCCGTTAATTATTGGTTT AACGCCGGTGGCTGAGTTCCTTTTTCTCTCCTTTTTTATTTTTATTTTTAGCTTTCTGAA TATCTGTCTTTCTCGAATATCTTTTTCATGTATATTTTGCTATAGAATAAATATGGAGGA TGTTATGATATAGACGTATAGCAAAATTGCAGTCGGTGGTAATTGAATTATAAGTGTATA ATTANATAGTTTATAAATATCATATG
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 480

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG14	N/A	51.34	JPsnpHou00493	View

Sequence

>JPsnpHou00493 ID=JPsnpHou00493; Name=JPsnpHou00493; organism=Pyrus pyrifolia; type=genetic_marker; length=866bp
GGACTAGCATCGCCAAAACAAGCGGCGGATGATGTTCCGCCGCTGTTGCG
CTGGCCTCCTAATCTTCAACTTCATCCTCCTCGTCACAATCCTCATCGTG
TGGGCCGTCCTCCAGCCCTCCAAGCCCCGCTTCGTCCTCCAAGACGTCAC
CGTCTTCAACTTCAACACCTCCGCCTCCAATGTCTTCTCCTCCAGCTTCC
AGGTCACCATCTCCTCCCGAAACCCGAACGACAAGATCGGCATCTACTAC
GACAGGCTCAACGTCTACGCGACCTACCGTGCGCAGCAGATCACGTTCCC
GACGCTCATCCCGCCGGTnTACCAAGGCCACAAGGACGGTCAACGATCTG
GTCGCCGTTCATCTACGGCACCGACGTCCCCATCGCTCCGTACAACTCCA
TCGCTCTGGGGCAGGACCAGAATGCCGGGTCGGTTCTTTTGCTCATCAAG
ATGGACGGCCGGGTCAGGTGGAAGGTCGGmACCTTCATCTCCGGTCGGTA
CCATTTGTACATCCGGTGCCCCGCTTTTATCGCTCTGGGTTCCAGGACCA
CCGGAGTTGAGGTCGGTAACAACGCCGTCAAGTACCAGCTGGTGCAGCGC
TGCAAAGTGACCGTATGAAGAAATTGGAGGCAAAACTGATGTGCCGTTAA
TTATTGGTTTAACGCCGGTGGCTGAGTTCCTTTTTCTCTCCTTTTTTATT
TTTATTTTTAGCTTTCTGAATATCTGTCTTTCTCGAATATCTTTTTCATG
TATATTTTGCTATAGAATAAATATGGAGGATGTTATGATATAGACGTATA
GCAAAATTGCAGTCGGTGGTAATTGAATTATAAGTGTATAATTANATAGT
TTATAAATATCATATG