JPsnpHou00489, JPsnpHou00489 (genetic_marker) Pyrus pyrifolia

Marker Overview


Name	JPsnpHou00489
dbSNP ID	N/A
Type	SNP
SNP Alleles	T/G
5' Flanking Sequence	GAGAAAGCAAAATGGAGGCACCGAAGACGATCGAGCACCAAATCGGAGGAATCCAGAACG ACGCCCTTCGGTTCGGACTTCACGGCGTCAAGAGCGACCTCGTCGGCGCTCACCCTGTCG AATCTGCTTTGGAATCGGCGAAGGTAACTCAGGAGCAGATAAATAGGAAAATCTTGGGGT ACACTTATGGAAGTGCGTTTCCACTGAAGATGGATCTCGAAAGGCAAATCCTTTCTCGAT TCCAGAGGCCTGCTGGACCAATTCCTTCTTCAATGTTGGGTTTGGAGGCTATGACTGGAA GATTGGATGATTTTGGCTTTGAGGATTACCTGAATGACCCCCGGGAATCTGAAACCTTCC GGCCTGTGGACACACATCATGCAATGGAAGTTCGCCTTGGACTTTCAAAGGGTCCAGTCA CCCCAAGCTTTATGTGATCCCTGTAGACTTCCTTCCCGAAAGAGGAGGATTGTAACCT
3' Flanking Sequence	GCGGTTGTCATGCATGGGCTTATACTTCGATGCCAACGTTGTTCTTAAAATTTGATTGTC TGTGGCGCTGTGAGTAGAAAGGTCCAGGCATTGATATTGTGGTGTTACATGTACTCTGTA GTAGTATTGGGTTATCTTCTATCCAATAACAGTTCCTCTATTTGGCACTTCAATTTATTT TTGAAAATTTAAGCTCCCCTCTTTGATCTTGGCTGTGGCCATGCGTGTGTTTCTATCAGA ATCCTGATAACTCTGTTCCATTCACGTTGCTTCGGATTTTTGATTACTAAATGTTGCT
Species	Pyrus pyrifolia
Publication	[view all]
Contact	Toshiya Yamamoto
Comment	SNP position in sequence: 479

Contact

Name

Details

Toshiya Yamamoto

First name:	Toshiya
Last name:	Yamamoto
Institution:	National Institute of Fruit Tree Science, Graduate School of Life and Environmental Sciences, University of Tsukuba
Address:	National Institute of Fruit Tree Science, 2-1 Fujimoto, Tsukuba, Ibaraki 305-8605, Japan
Country:	Japan
Email:	toshiya@affrc.go.jp
Last update:	Apr 2014

Publications


Year	Publication
2014	Terakami S, Nishitani C, Kunihisa M, Shirasawa K, Sato S, Tabata S, Kurita K, Kanamori H, Katayose Y, Takada N, Saito T, Yamamoto T. Transcriptome-based single nucleotide polymorphism markers for genome mapping in Japanese pear (Pyrus pyrifolia Nakai). Tree genetics & genomes. 2014; 10(4):853-863.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Pear-integrated_consensus_map-IPCG-2017	LG17	N/A	26.7	JPsnpHou00489	View

Sequence

>JPsnpHou00489 ID=JPsnpHou00489; Name=JPsnpHou00489; organism=Pyrus pyrifolia; type=genetic_marker; length=777bp
GAGAAAGCAAAATGGAGGCACCGAAGACGATCGAGCACCAAATCGGAGGA
ATCCAGAACGACGCCCTTCGGTTCGGACTTCACGGCGTCAAGAGCGACCT
CGTCGGCGCTCACCCTGTCGAATCTGCTTTGGAATCGGCGAAGGTAACTC
AGGAGCAGATAAATAGGAAAATCTTGGGGTACACTTATGGAAGTGCGTTT
CCACTGAAGATGGATCTCGAAAGGCAAATCCTTTCTCGATTCCAGAGGCC
TGCTGGACCAATTCCTTCTTCAATGTTGGGTTTGGAGGCTATGACTGGAA
GATTGGATGATTTTGGCTTTGAGGATTACCTGAATGACCCCCGGGAATCT
GAAACCTTCCGGCCTGTGGACACACATCATGCAATGGAAGTTCGCCTTGG
ACTTTCAAAGGGTCCAGTCACCCCAAGCTTTATGTGATCCCTGTAGACTT
CCTTCCCGAAAGAGGAGGATTGTAACCTkGCGGTTGTCATGCATGGGCTT
ATACTTCGATGCCAACGTTGTTCTTAAAATTTGATTGTCTGTGGCGCTGT
GAGTAGAAAGGTCCAGGCATTGATATTGTGGTGTTACATGTACTCTGTAG
TAGTATTGGGTTATCTTCTATCCAATAACAGTTCCTCTATTTGGCACTTC
AATTTATTTTTGAAAATTTAAGCTCCCCTCTTTGATCTTGGCTGTGGCCA
TGCGTGTGTTTCTATCAGAATCCTGATAACTCTGTTCCATTCACGTTGCT
TCGGATTTTTGATTACTAAATGTTGCT